Gene loci information

Transcript annotation

  • This transcript has been annotated as Catalase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7294 g7294.t34 TSS g7294.t34 22738599 22738599
chr_2 g7294 g7294.t34 isoform g7294.t34 22738614 22743186
chr_2 g7294 g7294.t34 exon g7294.t34.exon1 22738614 22738668
chr_2 g7294 g7294.t34 exon g7294.t34.exon2 22738732 22738820
chr_2 g7294 g7294.t34 cds g7294.t34.CDS1 22738773 22738820
chr_2 g7294 g7294.t34 exon g7294.t34.exon3 22741499 22741763
chr_2 g7294 g7294.t34 cds g7294.t34.CDS2 22741499 22741763
chr_2 g7294 g7294.t34 exon g7294.t34.exon4 22741922 22742038
chr_2 g7294 g7294.t34 cds g7294.t34.CDS3 22741922 22742038
chr_2 g7294 g7294.t34 exon g7294.t34.exon5 22742132 22743186
chr_2 g7294 g7294.t34 cds g7294.t34.CDS4 22742132 22743186
chr_2 g7294 g7294.t34 TTS g7294.t34 22743323 22743323

Sequences

>g7294.t34 Gene=g7294 Length=1581
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTTGTGT
GTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAACTT
AGTGACTTTAAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGGTGCA
CCAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGCAA
GATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTGTT
GTCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTACAAAA
TACTGTGCTGCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTGTGAGTTGTGGTGAAAGT
GGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCTGTTAAATTCTACACTGATGAA
GGCATTTGGGATTTGGTTGGCAATAACACACCGATTTTCTTCATTCGTGATCCAATCTTG
TTCCCAAGTTTCATTCACACACAAAAGAGAAATCCACAAACACACTTGAAAGACCCCAAC
ATGTTCTGGGACTTCCTTACTCTTCGTCCAGAATCAACTCATCAAGTTATGTTTTTGTTT
GCTGATCGTGGCATTCCAGACGGTTTTCGTCATATGAATGGTTATGGTTCACATACATTT
AAGACTGTTAATGACAAGGGTGAATCATTCTGGGTTAAATTCCATTACAAGACTGCACAA
GGTGTCAAAAATTTGGATATCAAGAAAGCTGAGGAATTGGCAGGAACAAACCCAGATTAT
GCATTGCAAGATCTTTTTGATGCAATTGGACGTGGTGATTTCCCACAATGGAACTTCTTC
ATTCAAGTTATGACAAATGAGCAAGCAGAGCAATACAAATGGAATCCATTTGATGTCACT
AAAGTTTGGTCACACAAAGATTTCCCATTGATTCCAGTTGGTCGAATGGTTTTGGATAGA
AATCCAAACAATTACTTTGCTGAAGTTGAACAAATTGCATTTTGTCCATCAAATATGGTG
CCTGGTATTGAACCATCACCAGATAAGATGTTGCAAGGTCGTCTTTTCTCATATGTCGAC
ACTCATCGTCATCGTTTGGGTGCAAATTATCAAATGTTACCAGTTAACTGTCCATACAGA
GTCAGTATCAAGAACTATCAACGCGATGGTCCAATGTGCTTCGACAGTCAGGGTAATGCA
CCAAATTATTATCCAAACTCATTCGGTGGACCAGAACCAATTAAACGTGCTGTTGATTTG
CAACCACCATACAAAGTTTCTGGCGAAGTTTTCCGTTATGATAGTGCTGATGAAGACAAT
TACAGTCAAGCAACTCTTTTCTGGAATAATGTTTTGGATGAACCTGCAAGAAACCGCATG
GTTGAAAATATTGCTGGACATCTTGTTAATGCTGCAGAATTTATTCAAGAACGCGGAGTC
AATATGTTCTCAAATGTATCTTCTGATTTCGGTCAAAAATTGAGAGAAGCACTCAATCTT
AAGAAACAAGGCAAATTGTAA

>g7294.t34 Gene=g7294 Length=494
MSASQNQLSDFKKSLKNGPAVATVGNGAPIGVKTATQTVGPRGPALLQDANYIDEMSHFD
RERVPERVVHAKGAGAFGYFEVTHDITKYCAAKVFEKVGKRTVSCGESGSADTVRDPRGF
AVKFYTDEGIWDLVGNNTPIFFIRDPILFPSFIHTQKRNPQTHLKDPNMFWDFLTLRPES
THQVMFLFADRGIPDGFRHMNGYGSHTFKTVNDKGESFWVKFHYKTAQGVKNLDIKKAEE
LAGTNPDYALQDLFDAIGRGDFPQWNFFIQVMTNEQAEQYKWNPFDVTKVWSHKDFPLIP
VGRMVLDRNPNNYFAEVEQIAFCPSNMVPGIEPSPDKMLQGRLFSYVDTHRHRLGANYQM
LPVNCPYRVSIKNYQRDGPMCFDSQGNAPNYYPNSFGGPEPIKRAVDLQPPYKVSGEVFR
YDSADEDNYSQATLFWNNVLDEPARNRMVENIAGHLVNAAEFIQERGVNMFSNVSSDFGQ
KLREALNLKKQGKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g7294.t34 CDD cd08156 catalase_clade_3 63 486 0.0
11 g7294.t34 Gene3D G3DSA:2.40.180.10 Catalase HpII 20 491 1.5E-228
3 g7294.t34 PANTHER PTHR11465:SF9 CATALASE 20 490 5.4E-229
4 g7294.t34 PANTHER PTHR11465 CATALASE 20 490 5.4E-229
12 g7294.t34 PIRSF PIRSF038928 Catalase_clade1-3 10 492 1.4E-203
9 g7294.t34 PRINTS PR00067 Catalase signature 36 59 7.1E-61
7 g7294.t34 PRINTS PR00067 Catalase signature 113 130 7.1E-61
5 g7294.t34 PRINTS PR00067 Catalase signature 132 150 7.1E-61
8 g7294.t34 PRINTS PR00067 Catalase signature 297 324 7.1E-61
6 g7294.t34 PRINTS PR00067 Catalase signature 329 355 7.1E-61
2 g7294.t34 Pfam PF00199 Catalase 24 397 5.8E-186
1 g7294.t34 Pfam PF06628 Catalase-related immune-responsive 424 486 1.5E-18
16 g7294.t34 ProSitePatterns PS00438 Catalase proximal active site signature. 59 75 -
15 g7294.t34 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 342 350 -
17 g7294.t34 ProSiteProfiles PS51402 catalase family profile. 19 492 75.322
14 g7294.t34 SMART SM01060 Catalase_2 23 400 4.5E-265
10 g7294.t34 SUPERFAMILY SSF56634 Heme-dependent catalase-like 15 490 3.4E-201

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004096 catalase activity MF
GO:0042744 hydrogen peroxide catabolic process BP
GO:0055114 NA NA

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed