General information for g7294.t35
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Catalase.
Parent gene
- The parent gene g7294 is located on chr_2: 22742132..22746850 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7294 | g7294.t35 | TSS | g7294.t35 | 22738599 | 22738599 |
| chr_2 | g7294 | g7294.t35 | isoform | g7294.t35 | 22738614 | 22743186 |
| chr_2 | g7294 | g7294.t35 | exon | g7294.t35.exon1 | 22738614 | 22738668 |
| chr_2 | g7294 | g7294.t35 | exon | g7294.t35.exon2 | 22738732 | 22738820 |
| chr_2 | g7294 | g7294.t35 | exon | g7294.t35.exon3 | 22741499 | 22741779 |
| chr_2 | g7294 | g7294.t35 | exon | g7294.t35.exon4 | 22741922 | 22742042 |
| chr_2 | g7294 | g7294.t35 | cds | g7294.t35.CDS1 | 22741988 | 22742042 |
| chr_2 | g7294 | g7294.t35 | exon | g7294.t35.exon5 | 22742132 | 22743186 |
| chr_2 | g7294 | g7294.t35 | cds | g7294.t35.CDS2 | 22742132 | 22743186 |
| chr_2 | g7294 | g7294.t35 | TTS | g7294.t35 | 22743323 | 22743323 |
Sequences
>g7294.t35 Gene=g7294 Length=1601
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTTGTGT
GTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAACTT
AGTGACTTTAAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGGTGCA
CCAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGCAA
GATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTGTT
GTCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTACAAAA
TACTGTGCTGCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTGTGAGTTGTTTTGAACTT
TTTTTGTGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCTGTTAA
ATTCTACACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTTTCTTCAT
TCGTAAGTGATCCAATCTTGTTCCCAAGTTTCATTCACACACAAAAGAGAAATCCACAAA
CACACTTGAAAGACCCCAACATGTTCTGGGACTTCCTTACTCTTCGTCCAGAATCAACTC
ATCAAGTTATGTTTTTGTTTGCTGATCGTGGCATTCCAGACGGTTTTCGTCATATGAATG
GTTATGGTTCACATACATTTAAGACTGTTAATGACAAGGGTGAATCATTCTGGGTTAAAT
TCCATTACAAGACTGCACAAGGTGTCAAAAATTTGGATATCAAGAAAGCTGAGGAATTGG
CAGGAACAAACCCAGATTATGCATTGCAAGATCTTTTTGATGCAATTGGACGTGGTGATT
TCCCACAATGGAACTTCTTCATTCAAGTTATGACAAATGAGCAAGCAGAGCAATACAAAT
GGAATCCATTTGATGTCACTAAAGTTTGGTCACACAAAGATTTCCCATTGATTCCAGTTG
GTCGAATGGTTTTGGATAGAAATCCAAACAATTACTTTGCTGAAGTTGAACAAATTGCAT
TTTGTCCATCAAATATGGTGCCTGGTATTGAACCATCACCAGATAAGATGTTGCAAGGTC
GTCTTTTCTCATATGTCGACACTCATCGTCATCGTTTGGGTGCAAATTATCAAATGTTAC
CAGTTAACTGTCCATACAGAGTCAGTATCAAGAACTATCAACGCGATGGTCCAATGTGCT
TCGACAGTCAGGGTAATGCACCAAATTATTATCCAAACTCATTCGGTGGACCAGAACCAA
TTAAACGTGCTGTTGATTTGCAACCACCATACAAAGTTTCTGGCGAAGTTTTCCGTTATG
ATAGTGCTGATGAAGACAATTACAGTCAAGCAACTCTTTTCTGGAATAATGTTTTGGATG
AACCTGCAAGAAACCGCATGGTTGAAAATATTGCTGGACATCTTGTTAATGCTGCAGAAT
TTATTCAAGAACGCGGAGTCAATATGTTCTCAAATGTATCTTCTGATTTCGGTCAAAAAT
TGAGAGAAGCACTCAATCTTAAGAAACAAGGCAAATTGTAA
>g7294.t35 Gene=g7294 Length=369
MKAFGIWLAITHRFSSFVSDPILFPSFIHTQKRNPQTHLKDPNMFWDFLTLRPESTHQVM
FLFADRGIPDGFRHMNGYGSHTFKTVNDKGESFWVKFHYKTAQGVKNLDIKKAEELAGTN
PDYALQDLFDAIGRGDFPQWNFFIQVMTNEQAEQYKWNPFDVTKVWSHKDFPLIPVGRMV
LDRNPNNYFAEVEQIAFCPSNMVPGIEPSPDKMLQGRLFSYVDTHRHRLGANYQMLPVNC
PYRVSIKNYQRDGPMCFDSQGNAPNYYPNSFGGPEPIKRAVDLQPPYKVSGEVFRYDSAD
EDNYSQATLFWNNVLDEPARNRMVENIAGHLVNAAEFIQERGVNMFSNVSSDFGQKLREA
LNLKKQGKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7294.t35 | Gene3D | G3DSA:2.40.180.10 | Catalase HpII | 5 | 366 | 1.1E-165 |
| 3 | g7294.t35 | PANTHER | PTHR11465:SF9 | CATALASE | 17 | 365 | 1.1E-161 |
| 4 | g7294.t35 | PANTHER | PTHR11465 | CATALASE | 17 | 365 | 1.1E-161 |
| 2 | g7294.t35 | Pfam | PF00199 | Catalase | 17 | 272 | 9.9E-125 |
| 1 | g7294.t35 | Pfam | PF06628 | Catalase-related immune-responsive | 299 | 361 | 1.0E-18 |
| 8 | g7294.t35 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 9 | g7294.t35 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 10 | g7294.t35 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 11 | - |
| 11 | g7294.t35 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 12 | 19 | - |
| 7 | g7294.t35 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 369 | - |
| 12 | g7294.t35 | ProSitePatterns | PS00437 | Catalase proximal heme-ligand signature. | 217 | 225 | - |
| 14 | g7294.t35 | ProSiteProfiles | PS51402 | catalase family profile. | 1 | 367 | 52.64 |
| 13 | g7294.t35 | SMART | SM01060 | Catalase_2 | 1 | 275 | 4.0E-133 |
| 5 | g7294.t35 | SUPERFAMILY | SSF56634 | Heme-dependent catalase-like | 17 | 363 | 4.71E-140 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006979 | response to oxidative stress | BP |
| GO:0020037 | heme binding | MF |
| GO:0004096 | catalase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed