Gene loci information

Transcript annotation

  • This transcript has been annotated as Catalase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7294 g7294.t46 TSS g7294.t46 22738599 22738599
chr_2 g7294 g7294.t46 isoform g7294.t46 22738614 22743186
chr_2 g7294 g7294.t46 exon g7294.t46.exon1 22738614 22738668
chr_2 g7294 g7294.t46 exon g7294.t46.exon2 22738732 22738820
chr_2 g7294 g7294.t46 cds g7294.t46.CDS1 22738773 22738820
chr_2 g7294 g7294.t46 exon g7294.t46.exon3 22741499 22741756
chr_2 g7294 g7294.t46 cds g7294.t46.CDS2 22741499 22741756
chr_2 g7294 g7294.t46 exon g7294.t46.exon4 22741834 22741861
chr_2 g7294 g7294.t46 cds g7294.t46.CDS3 22741834 22741861
chr_2 g7294 g7294.t46 exon g7294.t46.exon5 22741922 22742038
chr_2 g7294 g7294.t46 cds g7294.t46.CDS4 22741922 22742038
chr_2 g7294 g7294.t46 exon g7294.t46.exon6 22742132 22742840
chr_2 g7294 g7294.t46 cds g7294.t46.CDS5 22742132 22742840
chr_2 g7294 g7294.t46 exon g7294.t46.exon7 22742991 22743186
chr_2 g7294 g7294.t46 cds g7294.t46.CDS6 22742991 22743186
chr_2 g7294 g7294.t46 TTS g7294.t46 22743323 22743323

Sequences

>g7294.t46 Gene=g7294 Length=1452
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTTGTGT
GTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAACTT
AGTGACTTTAAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGGTGCA
CCAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGCAA
GATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTGTT
GTCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTACAAAA
TACTGTGCTGCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTCCTATTGCTGTGCGATTC
TCAACTGTTGGTGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCT
GTTAAATTCTACACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTTTC
TTCATTCGTGATCCAATCTTGTTCCCAAGTTTCATTCACACACAAAAGAGAAATCCACAA
ACACACTTGAAAGACCCCAACATGTTCTGGGACTTCCTTACTCTTCGTCCAGAATCAACT
CATCAAGTTATGTTTTTGTTTGCTGATCGTGGCATTCCAGACGGTTTTCGTCATATGAAT
GGTTATGGTTCACATACATTTAAGACTGTTAATGACAAGGGTGAATCATTCTGGGTTAAA
TTCCATTACAAGACTGCACAAGGTGTCAAAAATTTGGATATCAAGAAAGCTGAGGAATTG
GCAGGAACAAACCCAGATTATGCATTGCAAGATCTTTTTGATGCAATTGGACGTGGTGAT
TTCCCACAATGGAACTTCTTCATTCAAGTTATGACAAATGAGCAAGCAGAGCAATACAAA
TGGAATCCATTTGATGTCACTAAAGTTTGGTCACACAAAGATTTCCCATTGATTCCAGTT
GGTCGAATGGTTTTGGATAGAAATCCAAACAATTACTTTGCTGAAGTTGAACAAATTGCA
TTTTGTCCATCAAATATGGTGCCTGGTATTGAACCATCACCAGATAAGATGTTGCAAGGT
CGTCTTTTCTCATATGTCGACACTCATCGTCATCGTTTGGGTGCAAATTATCAAATGTTA
CCAGTTAACTGTCCATACAGAGTCAGTATCAAGAACTATCAACGCGATGGTCCAATTCAA
GCAACTCTTTTCTGGAATAATGTTTTGGATGAACCTGCAAGAAACCGCATGGTTGAAAAT
ATTGCTGGACATCTTGTTAATGCTGCAGAATTTATTCAAGAACGCGGAGTCAATATGTTC
TCAAATGTATCTTCTGATTTCGGTCAAAAATTGAGAGAAGCACTCAATCTTAAGAAACAA
GGCAAATTGTAA

>g7294.t46 Gene=g7294 Length=451
MSASQNQLSDFKKSLKNGPAVATVGNGAPIGVKTATQTVGPRGPALLQDANYIDEMSHFD
RERVPERVVHAKGAGAFGYFEVTHDITKYCAAKVFEKVGKRTPIAVRFSTVGGESGSADT
VRDPRGFAVKFYTDEGIWDLVGNNTPIFFIRDPILFPSFIHTQKRNPQTHLKDPNMFWDF
LTLRPESTHQVMFLFADRGIPDGFRHMNGYGSHTFKTVNDKGESFWVKFHYKTAQGVKNL
DIKKAEELAGTNPDYALQDLFDAIGRGDFPQWNFFIQVMTNEQAEQYKWNPFDVTKVWSH
KDFPLIPVGRMVLDRNPNNYFAEVEQIAFCPSNMVPGIEPSPDKMLQGRLFSYVDTHRHR
LGANYQMLPVNCPYRVSIKNYQRDGPIQATLFWNNVLDEPARNRMVENIAGHLVNAAEFI
QERGVNMFSNVSSDFGQKLREALNLKKQGKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
19 g7294.t46 CDD cd08156 catalase_clade_3 63 443 0.0
16 g7294.t46 Gene3D G3DSA:1.10.8.1230 - 2 63 3.1E-22
14 g7294.t46 Gene3D G3DSA:2.40.180.20 - 64 372 3.9E-196
15 g7294.t46 Gene3D G3DSA:1.20.1370.60 - 148 443 3.9E-196
4 g7294.t46 PANTHER PTHR11465:SF9 CATALASE 20 388 2.5E-221
6 g7294.t46 PANTHER PTHR11465 CATALASE 20 388 2.5E-221
3 g7294.t46 PANTHER PTHR11465:SF9 CATALASE 388 447 2.5E-221
5 g7294.t46 PANTHER PTHR11465 CATALASE 388 447 2.5E-221
18 g7294.t46 PIRSF PIRSF038928 Catalase_clade1-3 10 390 1.0E-192
17 g7294.t46 PIRSF PIRSF038928 Catalase_clade1-3 386 449 2.6E-8
12 g7294.t46 PRINTS PR00067 Catalase signature 36 59 3.7E-72
11 g7294.t46 PRINTS PR00067 Catalase signature 99 117 3.7E-72
10 g7294.t46 PRINTS PR00067 Catalase signature 120 137 3.7E-72
8 g7294.t46 PRINTS PR00067 Catalase signature 139 157 3.7E-72
7 g7294.t46 PRINTS PR00067 Catalase signature 304 331 3.7E-72
9 g7294.t46 PRINTS PR00067 Catalase signature 336 362 3.7E-72
2 g7294.t46 Pfam PF00199 Catalase 24 389 8.4E-192
1 g7294.t46 Pfam PF06628 Catalase-related immune-responsive 388 443 2.0E-14
22 g7294.t46 ProSitePatterns PS00438 Catalase proximal active site signature. 59 75 -
21 g7294.t46 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 349 357 -
23 g7294.t46 ProSiteProfiles PS51402 catalase family profile. 19 449 72.851
20 g7294.t46 SMART SM01060 Catalase_2 23 407 2.4E-265
13 g7294.t46 SUPERFAMILY SSF56634 Heme-dependent catalase-like 15 447 1.24E-197

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004096 catalase activity MF
GO:0042744 hydrogen peroxide catabolic process BP
GO:0055114 NA NA

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed