Gene loci information

Transcript annotation

  • This transcript has been annotated as Catalase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7294 g7294.t51 TSS g7294.t51 22738599 22738599
chr_2 g7294 g7294.t51 isoform g7294.t51 22738614 22743186
chr_2 g7294 g7294.t51 exon g7294.t51.exon1 22738614 22738668
chr_2 g7294 g7294.t51 exon g7294.t51.exon2 22738732 22738820
chr_2 g7294 g7294.t51 cds g7294.t51.CDS1 22738773 22738820
chr_2 g7294 g7294.t51 exon g7294.t51.exon3 22741526 22741756
chr_2 g7294 g7294.t51 cds g7294.t51.CDS2 22741526 22741756
chr_2 g7294 g7294.t51 exon g7294.t51.exon4 22741834 22741861
chr_2 g7294 g7294.t51 cds g7294.t51.CDS3 22741834 22741861
chr_2 g7294 g7294.t51 exon g7294.t51.exon5 22741922 22742038
chr_2 g7294 g7294.t51 cds g7294.t51.CDS4 22741922 22742038
chr_2 g7294 g7294.t51 exon g7294.t51.exon6 22742132 22743186
chr_2 g7294 g7294.t51 cds g7294.t51.CDS5 22742132 22743186
chr_2 g7294 g7294.t51 TTS g7294.t51 22743323 22743323

Sequences

>g7294.t51 Gene=g7294 Length=1575
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTTGTGT
GTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAACTT
AGTGACTTTAAAAAATCACTTAAGAATGGTGCACCAATCGGTGTTAAGACAGCAACACAA
ACTGTTGGACCACGTGGCCCAGCTCTCTTGCAAGATGCAAATTACATCGATGAGATGAGC
CACTTTGATCGTGAAAGAGTTCCAGAACGTGTTGTCCATGCCAAAGGTGCTGGTGCTTTT
GGATATTTTGAAGTTACTCATGATATTACAAAATACTGTGCTGCAAAAGTCTTTGAAAAA
GTTGGAAAACGCACTCCTATTGCTGTGCGATTCTCAACTGTTGGTGGTGAAAGTGGATCA
GCTGATACTGTTCGTGATCCTCGTGGTTTTGCTGTTAAATTCTACACTGATGAAGGCATT
TGGGATTTGGTTGGCAATAACACACCGATTTTCTTCATTCGTGATCCAATCTTGTTCCCA
AGTTTCATTCACACACAAAAGAGAAATCCACAAACACACTTGAAAGACCCCAACATGTTC
TGGGACTTCCTTACTCTTCGTCCAGAATCAACTCATCAAGTTATGTTTTTGTTTGCTGAT
CGTGGCATTCCAGACGGTTTTCGTCATATGAATGGTTATGGTTCACATACATTTAAGACT
GTTAATGACAAGGGTGAATCATTCTGGGTTAAATTCCATTACAAGACTGCACAAGGTGTC
AAAAATTTGGATATCAAGAAAGCTGAGGAATTGGCAGGAACAAACCCAGATTATGCATTG
CAAGATCTTTTTGATGCAATTGGACGTGGTGATTTCCCACAATGGAACTTCTTCATTCAA
GTTATGACAAATGAGCAAGCAGAGCAATACAAATGGAATCCATTTGATGTCACTAAAGTT
TGGTCACACAAAGATTTCCCATTGATTCCAGTTGGTCGAATGGTTTTGGATAGAAATCCA
AACAATTACTTTGCTGAAGTTGAACAAATTGCATTTTGTCCATCAAATATGGTGCCTGGT
ATTGAACCATCACCAGATAAGATGTTGCAAGGTCGTCTTTTCTCATATGTCGACACTCAT
CGTCATCGTTTGGGTGCAAATTATCAAATGTTACCAGTTAACTGTCCATACAGAGTCAGT
ATCAAGAACTATCAACGCGATGGTCCAATGTGCTTCGACAGTCAGGGTAATGCACCAAAT
TATTATCCAAACTCATTCGGTGGACCAGAACCAATTAAACGTGCTGTTGATTTGCAACCA
CCATACAAAGTTTCTGGCGAAGTTTTCCGTTATGATAGTGCTGATGAAGACAATTACAGT
CAAGCAACTCTTTTCTGGAATAATGTTTTGGATGAACCTGCAAGAAACCGCATGGTTGAA
AATATTGCTGGACATCTTGTTAATGCTGCAGAATTTATTCAAGAACGCGGAGTCAATATG
TTCTCAAATGTATCTTCTGATTTCGGTCAAAAATTGAGAGAAGCACTCAATCTTAAGAAA
CAAGGCAAATTGTAA

>g7294.t51 Gene=g7294 Length=492
MSASQNQLSDFKKSLKNGAPIGVKTATQTVGPRGPALLQDANYIDEMSHFDRERVPERVV
HAKGAGAFGYFEVTHDITKYCAAKVFEKVGKRTPIAVRFSTVGGESGSADTVRDPRGFAV
KFYTDEGIWDLVGNNTPIFFIRDPILFPSFIHTQKRNPQTHLKDPNMFWDFLTLRPESTH
QVMFLFADRGIPDGFRHMNGYGSHTFKTVNDKGESFWVKFHYKTAQGVKNLDIKKAEELA
GTNPDYALQDLFDAIGRGDFPQWNFFIQVMTNEQAEQYKWNPFDVTKVWSHKDFPLIPVG
RMVLDRNPNNYFAEVEQIAFCPSNMVPGIEPSPDKMLQGRLFSYVDTHRHRLGANYQMLP
VNCPYRVSIKNYQRDGPMCFDSQGNAPNYYPNSFGGPEPIKRAVDLQPPYKVSGEVFRYD
SADEDNYSQATLFWNNVLDEPARNRMVENIAGHLVNAAEFIQERGVNMFSNVSSDFGQKL
REALNLKKQGKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g7294.t51 CDD cd08156 catalase_clade_3 54 484 0.0
12 g7294.t51 Gene3D G3DSA:2.40.180.10 Catalase HpII 13 489 6.5E-239
3 g7294.t51 PANTHER PTHR11465:SF9 CATALASE 14 488 1.4E-238
4 g7294.t51 PANTHER PTHR11465 CATALASE 14 488 1.4E-238
13 g7294.t51 PIRSF PIRSF038928 Catalase_clade1-3 2 490 1.7E-213
10 g7294.t51 PRINTS PR00067 Catalase signature 27 50 5.0E-72
9 g7294.t51 PRINTS PR00067 Catalase signature 90 108 5.0E-72
8 g7294.t51 PRINTS PR00067 Catalase signature 111 128 5.0E-72
7 g7294.t51 PRINTS PR00067 Catalase signature 130 148 5.0E-72
6 g7294.t51 PRINTS PR00067 Catalase signature 295 322 5.0E-72
5 g7294.t51 PRINTS PR00067 Catalase signature 327 353 5.0E-72
2 g7294.t51 Pfam PF00199 Catalase 16 395 7.8E-197
1 g7294.t51 Pfam PF06628 Catalase-related immune-responsive 422 484 1.5E-18
17 g7294.t51 ProSitePatterns PS00438 Catalase proximal active site signature. 50 66 -
16 g7294.t51 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 340 348 -
18 g7294.t51 ProSiteProfiles PS51402 catalase family profile. 10 490 79.115
15 g7294.t51 SMART SM01060 Catalase_2 14 398 5.9E-279
11 g7294.t51 SUPERFAMILY SSF56634 Heme-dependent catalase-like 12 488 1.26E-209

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004096 catalase activity MF
GO:0042744 hydrogen peroxide catabolic process BP
GO:0055114 NA NA

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values