Gene loci information

Transcript annotation

  • This transcript has been annotated as Catalase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7294 g7294.t53 TSS g7294.t53 22738599 22738599
chr_2 g7294 g7294.t53 isoform g7294.t53 22738614 22743186
chr_2 g7294 g7294.t53 exon g7294.t53.exon1 22738614 22738668
chr_2 g7294 g7294.t53 exon g7294.t53.exon2 22738732 22738820
chr_2 g7294 g7294.t53 cds g7294.t53.CDS1 22738773 22738820
chr_2 g7294 g7294.t53 exon g7294.t53.exon3 22741499 22741693
chr_2 g7294 g7294.t53 cds g7294.t53.CDS2 22741499 22741693
chr_2 g7294 g7294.t53 exon g7294.t53.exon4 22741834 22741861
chr_2 g7294 g7294.t53 cds g7294.t53.CDS3 22741834 22741861
chr_2 g7294 g7294.t53 exon g7294.t53.exon5 22741922 22742038
chr_2 g7294 g7294.t53 cds g7294.t53.CDS4 22741922 22742038
chr_2 g7294 g7294.t53 exon g7294.t53.exon6 22742132 22743186
chr_2 g7294 g7294.t53 cds g7294.t53.CDS5 22742132 22743186
chr_2 g7294 g7294.t53 TTS g7294.t53 22743323 22743323

Sequences

>g7294.t53 Gene=g7294 Length=1539
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTTGTGT
GTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAACTT
AGTGACTTTAAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGGTGCA
CCAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGCAA
GATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTGTT
GTCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAACCTATTGCTGTGCGATTCTCA
ACTGTTGGTGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCTGTT
AAATTCTACACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTTTCTTC
ATTCGTGATCCAATCTTGTTCCCAAGTTTCATTCACACACAAAAGAGAAATCCACAAACA
CACTTGAAAGACCCCAACATGTTCTGGGACTTCCTTACTCTTCGTCCAGAATCAACTCAT
CAAGTTATGTTTTTGTTTGCTGATCGTGGCATTCCAGACGGTTTTCGTCATATGAATGGT
TATGGTTCACATACATTTAAGACTGTTAATGACAAGGGTGAATCATTCTGGGTTAAATTC
CATTACAAGACTGCACAAGGTGTCAAAAATTTGGATATCAAGAAAGCTGAGGAATTGGCA
GGAACAAACCCAGATTATGCATTGCAAGATCTTTTTGATGCAATTGGACGTGGTGATTTC
CCACAATGGAACTTCTTCATTCAAGTTATGACAAATGAGCAAGCAGAGCAATACAAATGG
AATCCATTTGATGTCACTAAAGTTTGGTCACACAAAGATTTCCCATTGATTCCAGTTGGT
CGAATGGTTTTGGATAGAAATCCAAACAATTACTTTGCTGAAGTTGAACAAATTGCATTT
TGTCCATCAAATATGGTGCCTGGTATTGAACCATCACCAGATAAGATGTTGCAAGGTCGT
CTTTTCTCATATGTCGACACTCATCGTCATCGTTTGGGTGCAAATTATCAAATGTTACCA
GTTAACTGTCCATACAGAGTCAGTATCAAGAACTATCAACGCGATGGTCCAATGTGCTTC
GACAGTCAGGGTAATGCACCAAATTATTATCCAAACTCATTCGGTGGACCAGAACCAATT
AAACGTGCTGTTGATTTGCAACCACCATACAAAGTTTCTGGCGAAGTTTTCCGTTATGAT
AGTGCTGATGAAGACAATTACAGTCAAGCAACTCTTTTCTGGAATAATGTTTTGGATGAA
CCTGCAAGAAACCGCATGGTTGAAAATATTGCTGGACATCTTGTTAATGCTGCAGAATTT
ATTCAAGAACGCGGAGTCAATATGTTCTCAAATGTATCTTCTGATTTCGGTCAAAAATTG
AGAGAAGCACTCAATCTTAAGAAACAAGGCAAATTGTAA

>g7294.t53 Gene=g7294 Length=480
MSASQNQLSDFKKSLKNGPAVATVGNGAPIGVKTATQTVGPRGPALLQDANYIDEMSHFD
RERVPERVVHAKGAGAFGYFEPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDEGIWDLV
GNNTPIFFIRDPILFPSFIHTQKRNPQTHLKDPNMFWDFLTLRPESTHQVMFLFADRGIP
DGFRHMNGYGSHTFKTVNDKGESFWVKFHYKTAQGVKNLDIKKAEELAGTNPDYALQDLF
DAIGRGDFPQWNFFIQVMTNEQAEQYKWNPFDVTKVWSHKDFPLIPVGRMVLDRNPNNYF
AEVEQIAFCPSNMVPGIEPSPDKMLQGRLFSYVDTHRHRLGANYQMLPVNCPYRVSIKNY
QRDGPMCFDSQGNAPNYYPNSFGGPEPIKRAVDLQPPYKVSGEVFRYDSADEDNYSQATL
FWNNVLDEPARNRMVENIAGHLVNAAEFIQERGVNMFSNVSSDFGQKLREALNLKKQGKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g7294.t53 CDD cd08156 catalase_clade_3 63 472 0.0
10 g7294.t53 Gene3D G3DSA:2.40.180.10 Catalase HpII 20 477 4.2E-222
4 g7294.t53 PANTHER PTHR11465:SF9 CATALASE 20 476 2.8E-219
5 g7294.t53 PANTHER PTHR11465 CATALASE 20 476 2.8E-219
12 g7294.t53 PIRSF PIRSF038928 Catalase_clade1-3 10 83 1.6E-20
11 g7294.t53 PIRSF PIRSF038928 Catalase_clade1-3 81 478 9.4E-176
8 g7294.t53 PRINTS PR00067 Catalase signature 36 59 5.6E-38
7 g7294.t53 PRINTS PR00067 Catalase signature 283 310 5.6E-38
6 g7294.t53 PRINTS PR00067 Catalase signature 315 341 5.6E-38
3 g7294.t53 Pfam PF00199 Catalase 24 81 1.5E-20
2 g7294.t53 Pfam PF00199 Catalase 82 383 2.9E-157
1 g7294.t53 Pfam PF06628 Catalase-related immune-responsive 410 472 1.5E-18
16 g7294.t53 ProSitePatterns PS00438 Catalase proximal active site signature. 59 75 -
15 g7294.t53 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 328 336 -
17 g7294.t53 ProSiteProfiles PS51402 catalase family profile. 19 478 75.729
14 g7294.t53 SMART SM01060 Catalase_2 23 386 7.8E-253
9 g7294.t53 SUPERFAMILY SSF56634 Heme-dependent catalase-like 15 476 3.79E-197

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004096 catalase activity MF
GO:0042744 hydrogen peroxide catabolic process BP
GO:0055114 NA NA

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values