General information for g7294.t65
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Catalase.
Parent gene
- The parent gene g7294 is located on chr_2: 22742132..22746850 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7294 | g7294.t65 | TSS | g7294.t65 | 22738599 | 22738599 |
| chr_2 | g7294 | g7294.t65 | isoform | g7294.t65 | 22738614 | 22743186 |
| chr_2 | g7294 | g7294.t65 | exon | g7294.t65.exon1 | 22738614 | 22738670 |
| chr_2 | g7294 | g7294.t65 | exon | g7294.t65.exon2 | 22738732 | 22738820 |
| chr_2 | g7294 | g7294.t65 | exon | g7294.t65.exon3 | 22741499 | 22741756 |
| chr_2 | g7294 | g7294.t65 | exon | g7294.t65.exon4 | 22741834 | 22741861 |
| chr_2 | g7294 | g7294.t65 | exon | g7294.t65.exon5 | 22741922 | 22742038 |
| chr_2 | g7294 | g7294.t65 | exon | g7294.t65.exon6 | 22742132 | 22742331 |
| chr_2 | g7294 | g7294.t65 | exon | g7294.t65.exon7 | 22742441 | 22743186 |
| chr_2 | g7294 | g7294.t65 | cds | g7294.t65.CDS1 | 22742515 | 22743186 |
| chr_2 | g7294 | g7294.t65 | TTS | g7294.t65 | 22743323 | 22743323 |
Sequences
>g7294.t65 Gene=g7294 Length=1495
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTGTTGT
GTGTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAAC
TTAGTGACTTTAAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGGTG
CACCAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGC
AAGATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTG
TTGTCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTACAA
AATACTGTGCTGCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTCCTATTGCTGTGCGAT
TCTCAACTGTTGGTGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTG
CTGTTAAATTCTACACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTT
TCTTCATTCGTGATCCAATCTTGTTCCCAAGTTTCATTCACACACAAAAGAGAAATCCAC
AAACACACTTGAAAGACCCCAACATGTTCTGGGACTTCCTTACTCTTCGTCCAGAATCAA
CTCATCAAGTTATGTTTTTGTTTGCTGATCGTGGCATTCCAGACGGTTTTCGTCATATGA
ATGGTTATGGTTCACATACATTTAAGACTATTATGCATTGCAAGATCTTTTTGATGCAAT
TGGACGTGGTGATTTCCCACAATGGAACTTCTTCATTCAAGTTATGACAAATGAGCAAGC
AGAGCAATACAAATGGAATCCATTTGATGTCACTAAAGTTTGGTCACACAAAGATTTCCC
ATTGATTCCAGTTGGTCGAATGGTTTTGGATAGAAATCCAAACAATTACTTTGCTGAAGT
TGAACAAATTGCATTTTGTCCATCAAATATGGTGCCTGGTATTGAACCATCACCAGATAA
GATGTTGCAAGGTCGTCTTTTCTCATATGTCGACACTCATCGTCATCGTTTGGGTGCAAA
TTATCAAATGTTACCAGTTAACTGTCCATACAGAGTCAGTATCAAGAACTATCAACGCGA
TGGTCCAATGTGCTTCGACAGTCAGGGTAATGCACCAAATTATTATCCAAACTCATTCGG
TGGACCAGAACCAATTAAACGTGCTGTTGATTTGCAACCACCATACAAAGTTTCTGGCGA
AGTTTTCCGTTATGATAGTGCTGATGAAGACAATTACAGTCAAGCAACTCTTTTCTGGAA
TAATGTTTTGGATGAACCTGCAAGAAACCGCATGGTTGAAAATATTGCTGGACATCTTGT
TAATGCTGCAGAATTTATTCAAGAACGCGGAGTCAATATGTTCTCAAATGTATCTTCTGA
TTTCGGTCAAAAATTGAGAGAAGCACTCAATCTTAAGAAACAAGGCAAATTGTAA
>g7294.t65 Gene=g7294 Length=223
MTNEQAEQYKWNPFDVTKVWSHKDFPLIPVGRMVLDRNPNNYFAEVEQIAFCPSNMVPGI
EPSPDKMLQGRLFSYVDTHRHRLGANYQMLPVNCPYRVSIKNYQRDGPMCFDSQGNAPNY
YPNSFGGPEPIKRAVDLQPPYKVSGEVFRYDSADEDNYSQATLFWNNVLDEPARNRMVEN
IAGHLVNAAEFIQERGVNMFSNVSSDFGQKLREALNLKKQGKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g7294.t65 | Gene3D | G3DSA:2.40.180.10 | Catalase HpII | 1 | 220 | 9.7E-98 |
| 3 | g7294.t65 | PANTHER | PTHR11465:SF9 | CATALASE | 1 | 219 | 1.9E-89 |
| 4 | g7294.t65 | PANTHER | PTHR11465 | CATALASE | 1 | 219 | 1.9E-89 |
| 6 | g7294.t65 | PRINTS | PR00067 | Catalase signature | 26 | 53 | 1.5E-26 |
| 5 | g7294.t65 | PRINTS | PR00067 | Catalase signature | 58 | 84 | 1.5E-26 |
| 2 | g7294.t65 | Pfam | PF00199 | Catalase | 1 | 126 | 1.4E-59 |
| 1 | g7294.t65 | Pfam | PF06628 | Catalase-related immune-responsive | 153 | 215 | 4.2E-19 |
| 9 | g7294.t65 | ProSitePatterns | PS00437 | Catalase proximal heme-ligand signature. | 71 | 79 | - |
| 11 | g7294.t65 | ProSiteProfiles | PS51402 | catalase family profile. | 1 | 221 | 28.798 |
| 10 | g7294.t65 | SMART | SM01060 | Catalase_2 | 1 | 129 | 2.3E-11 |
| 7 | g7294.t65 | SUPERFAMILY | SSF56634 | Heme-dependent catalase-like | 1 | 217 | 2.22E-79 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006979 | response to oxidative stress | BP |
| GO:0020037 | heme binding | MF |
| GO:0004096 | catalase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
