General information for g7299.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Mitochondrial import receptor subunit TOM40 homolog 1.
Parent gene
- The parent gene g7299 is located on chr_2: 22810244..22810867 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7299 | g7299.t10 | TTS | g7299.t10 | 22809516 | 22809516 |
| chr_2 | g7299 | g7299.t10 | isoform | g7299.t10 | 22810244 | 22810825 |
| chr_2 | g7299 | g7299.t10 | exon | g7299.t10.exon1 | 22810244 | 22810506 |
| chr_2 | g7299 | g7299.t10 | cds | g7299.t10.CDS1 | 22810244 | 22810506 |
| chr_2 | g7299 | g7299.t10 | exon | g7299.t10.exon2 | 22810663 | 22810825 |
| chr_2 | g7299 | g7299.t10 | cds | g7299.t10.CDS2 | 22810663 | 22810825 |
| chr_2 | g7299 | g7299.t10 | TSS | g7299.t10 | 22810938 | 22810938 |
Sequences
>g7299.t10 Gene=g7299 Length=426
ATGGGCAACGTTGGCGCAAGTTCAAAGCCAATTCAAGATAAATTTGATTTGCAAGCAGCT
CCAAAACCAATGGCAGACGATCAAAATCAATCAATTAGCAATAGCAATAAAACGCCACTT
GAAAATCCAGGAACTATTGAAGAGTTGCATAAGAAATGCAAAGATGTCATGCCAATATTC
TTTGAAGGTGCAAAGTTAATGGTGAATAAGGGACTGAGTAATCATTTTCAAGTTTCGCAT
ACTATCAATTTGTGTTCTGTAAATCCAAGTGGATATAAATTTGGAGCGACATATGTTGGA
ACAAAGCAATTTTCACCAAACGAAGCTTTTCCAGTCATTCTCGGTGATATTGATCCATCG
GGTAATCTTAATGCTAACATCATTCATCAGTTTGCACCTAATATTAGATGTAAATTTGCC
TCTCAA
>g7299.t10 Gene=g7299 Length=142
MGNVGASSKPIQDKFDLQAAPKPMADDQNQSISNSNKTPLENPGTIEELHKKCKDVMPIF
FEGAKLMVNKGLSNHFQVSHTINLCSVNPSGYKFGATYVGTKQFSPNEAFPVILGDIDPS
GNLNANIIHQFAPNIRCKFASQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7299.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - |
| 4 | g7299.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 42 | - |
| 2 | g7299.t10 | PANTHER | PTHR10802 | MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40 | 19 | 142 | 1.0E-45 |
| 3 | g7299.t10 | PANTHER | PTHR10802:SF1 | MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40 HOMOLOG | 19 | 142 | 1.0E-45 |
| 1 | g7299.t10 | Pfam | PF01459 | Eukaryotic porin | 42 | 142 | 8.6E-24 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0008320 | protein transmembrane transporter activity | MF |
| GO:0005741 | mitochondrial outer membrane | CC |
| GO:0030150 | protein import into mitochondrial matrix | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
