General information for g7299.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Mitochondrial import receptor subunit TOM40 homolog 1.
Parent gene
- The parent gene g7299 is located on chr_2: 22810244..22810867 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7299 | g7299.t4 | TTS | g7299.t4 | 22809516 | 22809516 |
| chr_2 | g7299 | g7299.t4 | isoform | g7299.t4 | 22809567 | 22810175 |
| chr_2 | g7299 | g7299.t4 | exon | g7299.t4.exon1 | 22809567 | 22809894 |
| chr_2 | g7299 | g7299.t4 | cds | g7299.t4.CDS1 | 22809567 | 22809894 |
| chr_2 | g7299 | g7299.t4 | exon | g7299.t4.exon2 | 22809953 | 22810175 |
| chr_2 | g7299 | g7299.t4 | cds | g7299.t4.CDS2 | 22809953 | 22810167 |
| chr_2 | g7299 | g7299.t4 | TSS | g7299.t4 | 22810938 | 22810938 |
Sequences
>g7299.t4 Gene=g7299 Length=551
AAAGCAAGATGACAGCTGCACAACTAACAACAGATTATAAAGGACAAGATTTTACAGCAT
CAGTGACTGTTGGCAATCCTAATATTATAAATAATTCCGGTGTTTTCGTTGCTCATTACC
TGCAATCAGTAACTAATAAACTTGCGCTTGGAGCTGAGCTTGCTTATCAATATGGACCAG
CAGTGCCTGGAGGTGAAATTGCAATTGTTTCAGCTGCTGGAAGATATGGCGATGAAAATT
CGGTATGGAGTGGTACTTTAGGAATGAGCGGAATTCATTTGTGCTATTATCAAAGAGCGA
GTGAGCAATTGCAAATTGGTGTTGAGCTAGAAACAAGTTTACGAATGCAGGAATCAACAG
CCACAATTGGCTATCAAATAGACTTGCCAAAAGCTGATTTAGTGTTTCGCGGAATGGTGG
ACACAAATTGGACTGTGGCAGCAGTGTTAGAAAAGAAACTTCAGCCTTTACCGTTTTCAT
TTGCTCTTAGTGGATTACTAAATCATCAAAAAAATTCCTTTAGGCTCGGTTGTGGCCTAA
TTATCGGTTAG
>g7299.t4 Gene=g7299 Length=180
MTAAQLTTDYKGQDFTASVTVGNPNIINNSGVFVAHYLQSVTNKLALGAELAYQYGPAVP
GGEIAIVSAAGRYGDENSVWSGTLGMSGIHLCYYQRASEQLQIGVELETSLRMQESTATI
GYQIDLPKADLVFRGMVDTNWTVAAVLEKKLQPLPFSFALSGLLNHQKNSFRLGCGLIIG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7299.t4 | CDD | cd07305 | Porin3_Tom40 | 1 | 180 | 0.0e+00 |
| 3 | g7299.t4 | Gene3D | G3DSA:2.40.160.10 | Porin | 62 | 179 | 2.2e-05 |
| 2 | g7299.t4 | PANTHER | PTHR10802 | MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40 | 2 | 180 | 0.0e+00 |
| 1 | g7299.t4 | Pfam | PF01459 | Eukaryotic porin | 3 | 174 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0008320 | protein transmembrane transporter activity | MF |
| GO:0005741 | mitochondrial outer membrane | CC |
| GO:0030150 | protein import into mitochondrial matrix | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
