General information for g7302.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Calcium uniporter protein, mitochondrial.
Parent gene
- The parent gene g7302 is located on chr_2: 22842150..22842684 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7302 | g7302.t1 | isoform | g7302.t1 | 22828281 | 22842150 |
| chr_2 | g7302 | g7302.t1 | exon | g7302.t1.exon1 | 22828281 | 22828308 |
| chr_2 | g7302 | g7302.t1 | exon | g7302.t1.exon2 | 22830038 | 22830266 |
| chr_2 | g7302 | g7302.t1 | cds | g7302.t1.CDS1 | 22830157 | 22830266 |
| chr_2 | g7302 | g7302.t1 | exon | g7302.t1.exon3 | 22830360 | 22830465 |
| chr_2 | g7302 | g7302.t1 | cds | g7302.t1.CDS2 | 22830360 | 22830465 |
| chr_2 | g7302 | g7302.t1 | exon | g7302.t1.exon4 | 22841137 | 22841238 |
| chr_2 | g7302 | g7302.t1 | cds | g7302.t1.CDS3 | 22841137 | 22841238 |
| chr_2 | g7302 | g7302.t1 | exon | g7302.t1.exon5 | 22841429 | 22841554 |
| chr_2 | g7302 | g7302.t1 | cds | g7302.t1.CDS4 | 22841429 | 22841554 |
| chr_2 | g7302 | g7302.t1 | exon | g7302.t1.exon6 | 22841672 | 22841749 |
| chr_2 | g7302 | g7302.t1 | cds | g7302.t1.CDS5 | 22841672 | 22841749 |
| chr_2 | g7302 | g7302.t1 | exon | g7302.t1.exon7 | 22841821 | 22842150 |
| chr_2 | g7302 | g7302.t1 | cds | g7302.t1.CDS6 | 22841821 | 22842150 |
| chr_2 | g7302 | g7302.t1 | TSS | g7302.t1 | NA | NA |
| chr_2 | g7302 | g7302.t1 | TTS | g7302.t1 | NA | NA |
Sequences
>g7302.t1 Gene=g7302 Length=999
ATGAATCATGACATCTATAAGACTTTATAAGTGACTGTCACCTATATAAGAGGATTGCCT
AATATTATTTGTCCATTGCCTAGTCGCAACGAAAAGTGCCAATTTGTGCTTCGTCCTGTA
TCGCATAATGTCGGCGATTTTCTTGAAATGCTAAAGTCAGAAGATAGAGGCATAGATCGA
GCAGCAATTTTAAATAAGGATGGTGTTAGAATAGCGTCATCATGCTCTATAGAAAGTCTC
ATGGATGAAAGCTTTTGGTTACATTTAAATGATAAGCATTACTATGTTGAGCCGCCTGAG
CGAGAAAAAATTTCCTCAGAGGAAATTACAAAGCTAGGCGATGTTAGATCCTTAGTAGCA
CAACTTTATGAGGCTCTTCATGTCAGTGAATATCAAATAAAAAAGGAACGAGAATTGCAC
GAAAAATTAGAAATTTTAAATTCAAAATTAGGACCACTTGAACAGAAACGTATGGAGTTA
GATATAAAGGCAGGCCGAAAAGCAAATGTGCTCTCTTGGGTTGGTTTAGGCTTGATGTCT
GTACAATTCGGAGTTCTTGCACGCTTGACGTGGTTTGAATACAGTTGGGATATTATGGAA
CCTGTTACATATTTTGTCACTTATGGTACTGCTATGGCAGCATATGCTTATTTCGTACTC
ACTAAACAGGAATATATATTGCCTGATGTAAAGGATCGACAACATTTACTTTCATTGCAT
AAAGCAGCAAAGAAAGTTGGACTTGACTTAGAACAATATAATGATATCAAACGACAAATA
GCCGAATTGGAATTTGATTTGTGCAGATTAAGAGATCCATTATATAAAAATCTTCCCATC
ACACCACCAAAATCTAAAACTTATAGTGCAAGCGAAATTGAATTATCAAAAAAATTGAAA
GGTATTCTAAATGATAATCAATTACTGGGGCGAAAGAGCAATATATTAGAGAAAGTTTCC
CATATTCTCGTATCAGCTTCAAAAAGACTTAAAAAGTAA
>g7302.t1 Gene=g7302 Length=283
MLKSEDRGIDRAAILNKDGVRIASSCSIESLMDESFWLHLNDKHYYVEPPEREKISSEEI
TKLGDVRSLVAQLYEALHVSEYQIKKERELHEKLEILNSKLGPLEQKRMELDIKAGRKAN
VLSWVGLGLMSVQFGVLARLTWFEYSWDIMEPVTYFVTYGTAMAAYAYFVLTKQEYILPD
VKDRQHLLSLHKAAKKVGLDLEQYNDIKRQIAELEFDLCRLRDPLYKNLPITPPKSKTYS
ASEIELSKKLKGILNDNQLLGRKSNILEKVSHILVSASKRLKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g7302.t1 | PANTHER | PTHR13462:SF16 | CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL | 2 | 234 | 1.9E-90 |
| 3 | g7302.t1 | PANTHER | PTHR13462 | CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL | 2 | 234 | 1.9E-90 |
| 1 | g7302.t1 | Pfam | PF04678 | Mitochondrial calcium uniporter | 5 | 207 | 6.9E-66 |
| 7 | g7302.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 120 | - |
| 10 | g7302.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 121 | 141 | - |
| 8 | g7302.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 142 | 152 | - |
| 9 | g7302.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 153 | 171 | - |
| 6 | g7302.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 172 | 283 | - |
| 5 | g7302.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 121 | 143 | - |
| 4 | g7302.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 153 | 172 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051560 | mitochondrial calcium ion homeostasis | BP |
KEGG
Orthology
- This transcript has been annotated with K20858 (calcium uniporter protein, mitochondrial)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
