Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ADP-ribosylation factor 1-like 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7303 g7303.t14 isoform g7303.t14 22847770 22849147
chr_2 g7303 g7303.t14 exon g7303.t14.exon1 22847770 22848182
chr_2 g7303 g7303.t14 exon g7303.t14.exon2 22848249 22848511
chr_2 g7303 g7303.t14 cds g7303.t14.CDS1 22848311 22848511
chr_2 g7303 g7303.t14 exon g7303.t14.exon3 22848617 22848824
chr_2 g7303 g7303.t14 cds g7303.t14.CDS2 22848617 22848721
chr_2 g7303 g7303.t14 exon g7303.t14.exon4 22848955 22849147
chr_2 g7303 g7303.t14 TSS g7303.t14 22849846 22849846
chr_2 g7303 g7303.t14 TTS g7303.t14 NA NA

Sequences

>g7303.t14 Gene=g7303 Length=1077
ATGGGAAACGTATTTGCTAATCTGTTCAAAGGTTTATTTGGTAAAAAGGAGATGAGAATA
TTGGTGAGTTGTACACATTTTTAATAACTATTTCACAATTTGCATTTTTACATAATTTTT
GACATTTATTCACTGTAGATGGTTGGTCTCGATGCTGCTGGTAAAACGACAATTTTATAC
AAGCTTAAATTAGGTGAAATTGTAACTACAATCCCAACCATTGGCTTCAACGTTGAAACT
GTAGAATACAAAAATATTTCATTTACTGTTTGGGGTGAGTATAGTTTATTTTTTAGATGA
GCTATCAAGCATTTGTAATAATTTCTCTTTTTTCTTTTATAGATGTTGGTGGTCAAGACA
AAATCCGCCCACTCTGGAGACATTATTTCCAAAATACCCAAGGGCTTATCTTTGTCGTTG
ATAGTAATGACCGTGAGCGTGTTGGTGAAGCTCGTGAAGAATTAATGAGAATGTTGGCTG
AAGATGAATTGAGGGATGCTGTGCTTTTAATTTTTGCCAACAAGCAGGTATGTTTTTTTA
AATTGCGTTTTAATAAATTGTATATTTATTATCAATTTAAATTTAATTTTTCTGCGTTTT
AGGATTTGCCCAATGCTATGAATGCAGCCGAAATCACAGATAAATTAGGTCTTCACTCAT
TACGAAACCGAAGCTGGTATATTCAAGCAACGTGTGCAACCAGTGGAGATGGCCTCTATG
AAGGTTTGGATTGGCTTTCGAATCAACTGAAGAACGCTAACCGCTAAGAATCCGAATATA
AATGAAGAAATAATATGAAAGTATTGATCTACCAACCATCAAAAAAACTTACATTTAATT
ATTTTCAAGCAAAAAAATGAGAGAAAAAGATAAAGAGAAATTGATTAAATAAATTCACAA
TATTCGGGATATTGAAACAAAAAAAAATAAAACAAGCAGAAAATTTAATGATATAAAAAA
CACACAGATTAAGGCATAAAAATCATTGCAAGAGGAAACAAAAAACACACTTTTAAATGA
GAAAAAAATAATGAAAAAACATTGCTGTCGTTAAGAAATATAAATAAAAAAGGCACT

>g7303.t14 Gene=g7303 Length=101
MSYQAFVIISLFSFIDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRML
AEDELRDAVLLIFANKQVCFFKLRFNKLYIYYQFKFNFSAF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g7303.t14 Gene3D G3DSA:3.40.50.300 - 6 80 9.9E-29
2 g7303.t14 PANTHER PTHR11711 ADP RIBOSYLATION FACTOR-RELATED 12 83 8.6E-37
3 g7303.t14 PANTHER PTHR11711:SF316 ADP-RIBOSYLATION FACTOR 3 12 83 8.6E-37
1 g7303.t14 Pfam PF00025 ADP-ribosylation factor family 12 77 3.1E-28
9 g7303.t14 Phobius SIGNAL_PEPTIDE Signal peptide region 1 19 -
10 g7303.t14 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
11 g7303.t14 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 15 -
12 g7303.t14 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 16 19 -
8 g7303.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 20 101 -
7 g7303.t14 ProSiteProfiles PS51417 small GTPase Arf family profile. 1 101 8.89
5 g7303.t14 SMART SM00177 arf_sub_2 2 98 5.7E-6
4 g7303.t14 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 12 77 3.44E-19

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values