Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ADP-ribosylation factor 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7303 g7303.t32 TTS g7303.t32 22847929 22847929
chr_2 g7303 g7303.t32 isoform g7303.t32 22848080 22849147
chr_2 g7303 g7303.t32 exon g7303.t32.exon1 22848080 22848182
chr_2 g7303 g7303.t32 exon g7303.t32.exon2 22848249 22848310
chr_2 g7303 g7303.t32 exon g7303.t32.exon3 22848511 22848675
chr_2 g7303 g7303.t32 cds g7303.t32.CDS1 22848569 22848675
chr_2 g7303 g7303.t32 exon g7303.t32.exon4 22848744 22848824
chr_2 g7303 g7303.t32 cds g7303.t32.CDS2 22848744 22848824
chr_2 g7303 g7303.t32 exon g7303.t32.exon5 22848955 22849009
chr_2 g7303 g7303.t32 cds g7303.t32.CDS3 22848955 22849009
chr_2 g7303 g7303.t32 exon g7303.t32.exon6 22849085 22849147
chr_2 g7303 g7303.t32 cds g7303.t32.CDS4 22849085 22849147
chr_2 g7303 g7303.t32 TSS g7303.t32 22849846 22849846

Sequences

>g7303.t32 Gene=g7303 Length=529
ATGGGAAACGTATTTGCTAATCTGTTCAAAGGTTTATTTGGTAAAAAGGAGATGAGAATA
TTGATGGTTGGTCTCGATGCTGCTGGTAAAACGACAATTTTATACAAGCTTAAATTAGGT
GAAATTGTAACTACAATCCCAACCATTGGCTTCAACGTTGAAACTGTAGAATACAAAAAT
ATTTCATTTACTGTTTGGGATGTTGGTGGTCAAGACAAAATCCGCCCACTCTGGAGACAT
TATTTCCAAAATACCCAAGTAAGTAGCATTATCACTACATTCATACATTTAATTTCATAT
TTATAAAATTGACATGAACCTTATAATTAATTGATTTTCATTTTTTTTTTTCTAAAAAAC
TAGGGATTTGCCCAATGCTATGAATGCAGCCGAAATCACAGATAAATTAGGTCTTCACTC
ATTACGAAACCGAAGCTGGTATATTCAAGCAACGTGTGCAACCAGTGGAGATGGCCTCTA
TGAAGGTTTGGATTGGCTTTCGAATCAACTGAAGAACGCTAACCGCTAA

>g7303.t32 Gene=g7303 Length=101
MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
ISFTVWDVGGQDKIRPLWRHYFQNTQVSSIITTFIHLISYL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g7303.t32 Gene3D G3DSA:3.40.50.300 - 18 92 0.0000000
2 g7303.t32 PANTHER PTHR11711 ADP RIBOSYLATION FACTOR-RELATED 1 88 0.0000000
3 g7303.t32 PANTHER PTHR11711:SF357 ADP-RIBOSYLATION FACTOR 1 1 88 0.0000000
4 g7303.t32 PRINTS PR00328 GTP-binding SAR1 protein signature 19 42 0.0000001
5 g7303.t32 PRINTS PR00328 GTP-binding SAR1 protein signature 47 71 0.0000001
1 g7303.t32 Pfam PF00025 ADP-ribosylation factor family 6 87 0.0000000
9 g7303.t32 ProSiteProfiles PS51417 small GTPase Arf family profile. 11 101 10.3220000
8 g7303.t32 SMART SM00177 arf_sub_2 1 101 0.0000000
6 g7303.t32 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 13 87 0.0000000
10 g7303.t32 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 16 88 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed