Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ADP-ribosylation factor 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7303 g7303.t55 TTS g7303.t55 22847929 22847929
chr_2 g7303 g7303.t55 isoform g7303.t55 22848080 22849864
chr_2 g7303 g7303.t55 exon g7303.t55.exon1 22848080 22848182
chr_2 g7303 g7303.t55 cds g7303.t55.CDS1 22848080 22848182
chr_2 g7303 g7303.t55 exon g7303.t55.exon2 22848249 22848310
chr_2 g7303 g7303.t55 cds g7303.t55.CDS2 22848249 22848310
chr_2 g7303 g7303.t55 exon g7303.t55.exon3 22848386 22848511
chr_2 g7303 g7303.t55 cds g7303.t55.CDS3 22848386 22848511
chr_2 g7303 g7303.t55 exon g7303.t55.exon4 22848704 22848824
chr_2 g7303 g7303.t55 cds g7303.t55.CDS4 22848704 22848721
chr_2 g7303 g7303.t55 exon g7303.t55.exon5 22848955 22849009
chr_2 g7303 g7303.t55 exon g7303.t55.exon6 22849085 22849284
chr_2 g7303 g7303.t55 exon g7303.t55.exon7 22849729 22849864
chr_2 g7303 g7303.t55 TSS g7303.t55 22850791 22850791

Sequences

>g7303.t55 Gene=g7303 Length=803
AGTTCAAGTTGAACGTTGAACTGAAATTCTCCGCTTTCGTTCTCAAAAAATAATTTTTAA
GTGAGGATTAGATAAATTATTTCGATATTTAAGGCATCAGGACATTTAGAAAACTGAAGT
TAAGCATCAAGCGTAGATAAAGCTATATCGTCGCTAAACACAAGAAAAACTATAATTTAG
AAAGGAAACTGCGAGTGCAAGAGGAGAAAAAAAGAAGATTGTGTGTGACCTGTGAAATTA
TATACATTCGAAAAGAAGACTTAATAAATAAAGATGGGAAACGTATTTGCTAATCTGTTC
AAAGGTTTATTTGGTAAAAAGGAGATGAGAATATTGATGGTTGGTCTCGATGCTGCTGGT
AAAACGACAATTTTATACAAGCTTAAATTAGGTGAAATTGTAACTACAATCCCAACCATT
GGCTTCAACGTTGAAACTGTAGAATACAAAAATATTTCATTTACTGTTTGGGGTGAGTAT
AGTTTATTTTTTAGATGAGCTATCAAGCATTTGGGCTTATCTTTGTCGTTGATAGTAATG
ACCGTGAGCGTGTTGGTGAAGCTCGTGAAGAATTAATGAGAATGTTGGCTGAAGATGAAT
TGAGGGATGCTGTGCTTTTAATTTTTGCCAACAAGCAGGATTTGCCCAATGCTATGAATG
CAGCCGAAATCACAGATAAATTAGGTCTTCACTCATTACGAAACCGAAGCTGGTATATTC
AAGCAACGTGTGCAACCAGTGGAGATGGCCTCTATGAAGGTTTGGATTGGCTTTCGAATC
AACTGAAGAACGCTAACCGCTAA

>g7303.t55 Gene=g7303 Length=102
MSYQAFGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEIT
DKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNANR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g7303.t55 Coils Coil Coil 90 102 -
6 g7303.t55 Gene3D G3DSA:3.40.50.300 - 2 101 4.1E-37
2 g7303.t55 PANTHER PTHR11711 ADP RIBOSYLATION FACTOR-RELATED 6 100 3.2E-53
3 g7303.t55 PANTHER PTHR11711:SF392 ADP-RIBOSYLATION FACTOR 1 6 100 3.2E-53
1 g7303.t55 Pfam PF00025 ADP-ribosylation factor family 7 96 1.4E-33
8 g7303.t55 ProSiteProfiles PS51417 small GTPase Arf family profile. 1 97 10.959
5 g7303.t55 SMART SM00177 arf_sub_2 1 101 5.2E-32
4 g7303.t55 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 5 100 7.36E-24

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed