General information for g7315.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Aminoacylase-1B.
Parent gene
- The parent gene g7315 is located on chr_2: 22872140..22873482 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7315 | g7315.t2 | TTS | g7315.t2 | 22872081 | 22872081 |
| chr_2 | g7315 | g7315.t2 | isoform | g7315.t2 | 22872140 | 22872949 |
| chr_2 | g7315 | g7315.t2 | exon | g7315.t2.exon1 | 22872140 | 22872347 |
| chr_2 | g7315 | g7315.t2 | cds | g7315.t2.CDS1 | 22872140 | 22872347 |
| chr_2 | g7315 | g7315.t2 | exon | g7315.t2.exon2 | 22872399 | 22872949 |
| chr_2 | g7315 | g7315.t2 | cds | g7315.t2.CDS2 | 22872399 | 22872940 |
| chr_2 | g7315 | g7315.t2 | TSS | g7315.t2 | 22873516 | 22873516 |
Sequences
>g7315.t2 Gene=g7315 Length=759
ATTGGTGGAATGAAGGAGTTTATTGAAACAGAAGCATTTAAAAATCTAAATGTTGGTTTT
GCACTTGATGAGGGTGCACCATTATGGAATGAATTTTTTACGGCATTTTATGGTGAAAGA
TCCACTTGGCAGGTTGAATTTATTATAAAAGGCGAGGCAGGACATGGAAGCATCATGATA
GAAGACACAGCAGCAGTAAAATTACAACGATTGCTTACAAAACTCACTGAATATCGTCAA
TCTGAATATGCACGGTTGAGTAGTCGTCTCGATCTTCAAATGATAGGTCGCATAACGTCA
TCAAATGTAACAATAATAAATGGTGGTCACCAAGCAAATGTTATTCCATCCGAATTTAAA
ATAATGGTTGATTTTCGTGTGTCAAATGATATTGATCATGAAGAGTTTGTAAAAATGTTT
GAAGGTTGGTGTGAGGAAGTAGGTCGTGACATCAGCTATAGATTAGAACTTCGCGAAGAT
AAAATTGATTTGACAGATATTAGTGAAAAAAATAAATATTGGACAACATTTAAAAATAGT
CTTGATGAACTTGGATTAAAATTAATACCGATAATTTGCCCTGCGATGACAGATGCTCGT
TTCTTAAGAAAAGTTAAAATTCCTGCGATTGGTTTTAGTCCGATGAATTTTACTCCGATT
TTGGCACACGCTCACAATGAGTTCCTTAATGCTGATATTTATCTCAAAGGAATTGAAATT
TATAAAAAACTTATCGCTAATTTGGCAAATATGGATTGA
>g7315.t2 Gene=g7315 Length=249
MKEFIETEAFKNLNVGFALDEGAPLWNEFFTAFYGERSTWQVEFIIKGEAGHGSIMIEDT
AAVKLQRLLTKLTEYRQSEYARLSSRLDLQMIGRITSSNVTIINGGHQANVIPSEFKIMV
DFRVSNDIDHEEFVKMFEGWCEEVGRDISYRLELREDKIDLTDISEKNKYWTTFKNSLDE
LGLKLIPIICPAMTDARFLRKVKIPAIGFSPMNFTPILAHAHNEFLNADIYLKGIEIYKK
LIANLANMD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g7315.t2 | Gene3D | G3DSA:3.30.70.360 | - | 39 | 153 | 0 |
| 8 | g7315.t2 | Gene3D | G3DSA:3.30.70.1640 | - | 168 | 248 | 0 |
| 3 | g7315.t2 | PANTHER | PTHR45892 | AMINOACYLASE-1 | 1 | 248 | 0 |
| 4 | g7315.t2 | PANTHER | PTHR45892:SF1 | AMINOACYLASE-1 | 1 | 248 | 0 |
| 9 | g7315.t2 | PIRSF | PIRSF036696 | ACY-1 | 1 | 249 | 0 |
| 1 | g7315.t2 | Pfam | PF07687 | Peptidase dimerisation domain | 34 | 146 | 0 |
| 2 | g7315.t2 | Pfam | PF01546 | Peptidase family M20/M25/M40 | 147 | 244 | 0 |
| 5 | g7315.t2 | SUPERFAMILY | SSF53187 | Zn-dependent exopeptidases | 2 | 248 | 0 |
| 6 | g7315.t2 | SUPERFAMILY | SSF55031 | Bacterial exopeptidase dimerisation domain | 40 | 154 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed