Gene loci information

Transcript annotation

  • This transcript has been annotated as Dynactin subunit 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7317 g7317.t1 TSS g7317.t1 22876264 22876264
chr_2 g7317 g7317.t1 isoform g7317.t1 22876505 22881128
chr_2 g7317 g7317.t1 exon g7317.t1.exon1 22876505 22876601
chr_2 g7317 g7317.t1 cds g7317.t1.CDS1 22876505 22876601
chr_2 g7317 g7317.t1 exon g7317.t1.exon2 22876685 22876764
chr_2 g7317 g7317.t1 cds g7317.t1.CDS2 22876685 22876764
chr_2 g7317 g7317.t1 exon g7317.t1.exon3 22876831 22876946
chr_2 g7317 g7317.t1 cds g7317.t1.CDS3 22876831 22876946
chr_2 g7317 g7317.t1 exon g7317.t1.exon4 22877304 22877366
chr_2 g7317 g7317.t1 cds g7317.t1.CDS4 22877304 22877366
chr_2 g7317 g7317.t1 exon g7317.t1.exon5 22877701 22880415
chr_2 g7317 g7317.t1 cds g7317.t1.CDS5 22877701 22880415
chr_2 g7317 g7317.t1 exon g7317.t1.exon6 22880484 22880823
chr_2 g7317 g7317.t1 cds g7317.t1.CDS6 22880484 22880823
chr_2 g7317 g7317.t1 exon g7317.t1.exon7 22880877 22881128
chr_2 g7317 g7317.t1 cds g7317.t1.CDS7 22880877 22881128
chr_2 g7317 g7317.t1 TTS g7317.t1 22881352 22881352

Sequences

>g7317.t1 Gene=g7317 Length=3663
ATGGCTGAAAAAATATTAAAGGTCGGCTCTAGAGTCGAAATCAAGGAGAAAGGAGTGAAA
GGAACAGTTCAATATGTTGGATTGACTTCATTTGCAGCTGGTAAATGGGTAGGAGTTGTT
TTAGATGAACCGAAAGGAAAAAATAATGGAAGTATCAAAGGAACTGCATATTTTTCGTGT
CCGGATAATTATGGAATGTTTGTTCGTGATACTCAGTGTCTTCATTTAGATGATTCAGAT
AATCCAATTCTTGATAGCCCTGAAGAAAAACCAAGATCTTCTCGTCTTAGCACCTCGGGA
TCGGCACGTTCTCTTGTATCATTGAGTGGCAGTAATCCGATTGCCAAACCAACAACTTCA
CGTTTATCACTTTCTGGTAGCCGACAGAGCTTGTCTGGATCGAGAACTCATCTTGCTCAA
CCAACAGCCATTAGCAGTGAAAAGCAAGAATCTTTGAGAACGACTTCAAGAGCCTCAATT
AGTCCTGCAGAGAGTGTATCAGCATCTAAAAGAGCTTCATTTGTTGAAACAGGATTCTTG
GAAACATTGAAGCCACAATTTACTCCAGGTCAATCACTAACTTCTCCTTCAATCGCACCG
ACAACATCGAATGAAGATAAAATTCATGCATTACAGTTGCAACAAGAAAATGAAGACTTA
AAAAATCAAGTACGCGATTTGTCCGAGAAATTGGAAACGCTGAAAATAAGAAGGTCAGAA
GATAAAGAAAGAATGCGAGAATATGACAAAATGAAAACACAATTTGATCAATTGCAAGAA
TTTAAAGGCAAAATTATGGATGCTCAATCGAGTTTGCAAAGAGAATTACAACGAGCTAAG
CAAGAGGCAAAAGATGCAATCGAAGCAAGAGATCGACATCAAGAAGAAATGGCAGAGTTG
GCTGAAAATGTTGAACTCATCACACTTGATAAAGAAATGGCTGAAGAAAAAGCTGATACT
CTTCAGTTGGAATTAGACAATGCTAAAGAGCGTATTGAAGAGTTGACACTTGACTTAGAA
ATCTTAAAAACAGAAATGCAAGAAAAGTGTGCAATTAAAACCGTTGAAGGAACAGCCGAA
GTGACAACTGGTATGTCAATTTATGAAATGAAGCAGTTAGAACAACAAAACACTAGACTA
AGAGAGACATTTGTTCGAATGCGTGATCTTTCTGCACACGAGAAGCATGAAATTCAAAAA
TTACAGAAAGAGTTAGAAATGAAAAAGTCTGAAGTCCAGGAACTTCAAAGAACAAAGGAA
AAACTTTCATCTCGAGTAGATGAACTTGAAGGACAAATCGTTGATCTTCAAGAGCAAGTC
GATGCAGCTCTCGGTGCAGAAGAAATGGTTGAACAGTTAGCAGAAAAGAAGATGGAACTT
GAAGATCGAGTGAAACAATTAGAAGAAGAAGTCACTGAACTTGAAGCACTTGAAGAAGTT
CATGAACAACTTGTTGAAAGTAACCATGAATTAGAGTTAGATTTACGTGAAGAACTTGAT
ATGGCGCATGCAGCAAAACGTGATGCTCTTCGCGAAAGAGATGCTGCTTTAGAGACTGTT
CTCGATCGGGATCAGACAATTTTGAAATTCAGAGAATTAGTGCAACGATTGAATGAGCAA
ACACAAGAACTTCGTGACAAAATTAATCGTGATTCAAGATTGGGTGATGGAGAACATAAG
ATTGCTGATACAATTGATTTCAAGCAAATATTCACTGATGCTAAAGCTCATACTCGTGCT
ATTGATTTACAATTACGTCAAATTGAGTTGACTGAAGTTAATCAACATATAAATTATCTT
TTGGGTTTTATGCCTGAAACATTTATGGCTCGTGGTGGCGATCATGATGCGATTTTAGTT
ATTCTGCTTGTATCTCGAATAGTTTTCAAAGCAGGCATTGTGGTGACAAATGTTAGAGAG
CGATTTGGTCCAGTTTCATTAATTGACCGAAATGCTGTTATGCAAGGACATGAAGTGCAT
CAATTTGCTTTTCGTTCTCGCTTATTATATTATATGCATAATCTTCAACAAATCATGCAT
CAATTTTTATATGGTCTTAGTGCTTGCACTCCTGATGTTTTACTTAAAATAGGATCTTCA
TTGCCTGAAATGGTAGCTCAAGAAAAGATTGTCGATAGCATCATTGAATTGCTGAAACTT
AATCAATTGGATGAAAATTCATCAACTGATAATCTCGAAAAGTGCGTATCATTTTTCAAT
GCAATTTATTCTGTACTTCTCGCTAGTGAAGGACTTACAAACGAAACTCAAATGATTAGA
GATTGTATCGCTGCAATTCAAACAGCATGTGATTCGATTGAGACAAACAGTGCGATGATT
CGTGCTTTAATACAAGGTGGTGATGAGACAAGTGAAAGTGGACTTTTATTACAATTTGTT
ATTCAGACAAGTGAAAACATTCGTCAACAATTGAAACTCATCAAGCGTAGACTGCCTCAA
GATGTGAGCATCACAAAGTGCAATATTTCATCAAATACATTGCAAAATCTAAAAACAACA
GTTGAAAATCTAAGCAAGTTACTTAGTTTGATGCATTTATGCACAAAGCATGTTATAGCA
TATATCACATCAGATGCTGGTGATGACTCTTCAGTTATTTCTATTTCAAATGCCAAATTG
TGGGAGTTGATGTCACAATTGTGTGAGCGAGTATACGAGCAAGATGACAGAGGCGTTTCA
CAAAATGTCAAAAATTTTTTGACAAATGCCAACACAGACATGTCACAATTGGCACAATAT
TTATTAGATCATGAGTATGAAATCATGTCTGTCACACAAAATGAAAAGGTTCAGCCTCCA
ATTGCACAGAGAGCACAAATTGTCAAGAAACATCTTGAAGAAACCAAAACGTTGACTGCT
ACATTAGAGAATCGCGATGCTGAAATTCGTCAGCTTAAGATGAGTATAAAGATGAAACAA
AATGAACTCTCTGAAATGCAAATTCGTAAGGATTTGGCTGAAAAGAAACTTTCGGTACTT
CAACAAGACCATGAATCTAATTCAGCGAGATTGCAGAAATTATTAGATGAAGCTACTGAA
GCTCTTCGAAAGAAGGAGAAAGAATATGAGGAGACAATGGATCATTTGCAGAGTGACATT
GATTCTCTAGAAAATGAACGTGGTGTTTTAAGAGAAAAACTTAAAACATATAGCAATAAG
AAGGGAGATTTAAAGACAACCACAGCTCTTGATATAACAGCAAGTTCGCCTCATATTGCA
CAAGAACTTACACTTTTACAAAAAGCACTAAAAGACGAACGCGAATCTAGAATGAAATTG
CAAGCTCAAGAATATGAAAAGATTCTAAAGAGTCTTGCACCAATTCATGTTCCTAAACTT
AGAGATCCAAAACTTGATGCACTTGATGAAGAACTGAGAAAAGTTCGATATGATATGGTG
ATGTCGCTTGTTAAAGGATCAGAAATTCCAACAACTAAAACAAAACATGGTAATTTTACA
AAATTGGTTCAAGATCATAAAAATCGTCAACAGAAAATTCGTAATCATATAAATGCCAAG
GTAGAGATGGTTGCAGGCGAAATAATGCAAGAGTATTTAGATAGAAAACCTTTTAATGCA
ACATTATCTGGTGACTTTAAAACCTTTCCAAAAGCAGAAGCTATTAAACAATTTCAAGGA
TAA

>g7317.t1 Gene=g7317 Length=1220
MAEKILKVGSRVEIKEKGVKGTVQYVGLTSFAAGKWVGVVLDEPKGKNNGSIKGTAYFSC
PDNYGMFVRDTQCLHLDDSDNPILDSPEEKPRSSRLSTSGSARSLVSLSGSNPIAKPTTS
RLSLSGSRQSLSGSRTHLAQPTAISSEKQESLRTTSRASISPAESVSASKRASFVETGFL
ETLKPQFTPGQSLTSPSIAPTTSNEDKIHALQLQQENEDLKNQVRDLSEKLETLKIRRSE
DKERMREYDKMKTQFDQLQEFKGKIMDAQSSLQRELQRAKQEAKDAIEARDRHQEEMAEL
AENVELITLDKEMAEEKADTLQLELDNAKERIEELTLDLEILKTEMQEKCAIKTVEGTAE
VTTGMSIYEMKQLEQQNTRLRETFVRMRDLSAHEKHEIQKLQKELEMKKSEVQELQRTKE
KLSSRVDELEGQIVDLQEQVDAALGAEEMVEQLAEKKMELEDRVKQLEEEVTELEALEEV
HEQLVESNHELELDLREELDMAHAAKRDALRERDAALETVLDRDQTILKFRELVQRLNEQ
TQELRDKINRDSRLGDGEHKIADTIDFKQIFTDAKAHTRAIDLQLRQIELTEVNQHINYL
LGFMPETFMARGGDHDAILVILLVSRIVFKAGIVVTNVRERFGPVSLIDRNAVMQGHEVH
QFAFRSRLLYYMHNLQQIMHQFLYGLSACTPDVLLKIGSSLPEMVAQEKIVDSIIELLKL
NQLDENSSTDNLEKCVSFFNAIYSVLLASEGLTNETQMIRDCIAAIQTACDSIETNSAMI
RALIQGGDETSESGLLLQFVIQTSENIRQQLKLIKRRLPQDVSITKCNISSNTLQNLKTT
VENLSKLLSLMHLCTKHVIAYITSDAGDDSSVISISNAKLWELMSQLCERVYEQDDRGVS
QNVKNFLTNANTDMSQLAQYLLDHEYEIMSVTQNEKVQPPIAQRAQIVKKHLEETKTLTA
TLENRDAEIRQLKMSIKMKQNELSEMQIRKDLAEKKLSVLQQDHESNSARLQKLLDEATE
ALRKKEKEYEETMDHLQSDIDSLENERGVLREKLKTYSNKKGDLKTTTALDITASSPHIA
QELTLLQKALKDERESRMKLQAQEYEKILKSLAPIHVPKLRDPKLDALDEELRKVRYDMV
MSLVKGSEIPTTKTKHGNFTKLVQDHKNRQQKIRNHINAKVEMVAGEIMQEYLDRKPFNA
TLSGDFKTFPKAEAIKQFQG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g7317.t1 Coils Coil Coil 210 244 -
11 g7317.t1 Coils Coil Coil 262 345 -
10 g7317.t1 Coils Coil Coil 370 494 -
7 g7317.t1 Coils Coil Coil 527 554 -
8 g7317.t1 Coils Coil Coil 962 1060 -
12 g7317.t1 Coils Coil Coil 1083 1103 -
6 g7317.t1 Gene3D G3DSA:2.30.30.190 - 1 88 1.0E-27
16 g7317.t1 MobiDBLite mobidb-lite consensus disorder prediction 84 167 -
15 g7317.t1 MobiDBLite mobidb-lite consensus disorder prediction 93 167 -
3 g7317.t1 PANTHER PTHR18916:SF6 DYNACTIN SUBUNIT 1 4 1200 1.1E-281
4 g7317.t1 PANTHER PTHR18916 DYNACTIN 1-RELATED MICROTUBULE-BINDING 4 1200 1.1E-281
2 g7317.t1 Pfam PF01302 CAP-Gly domain 8 73 2.5E-22
1 g7317.t1 Pfam PF12455 Dynein associated protein 562 818 5.7E-72
13 g7317.t1 ProSitePatterns PS00845 CAP-Gly domain signature. 27 58 -
17 g7317.t1 ProSiteProfiles PS50245 CAP-Gly domain profile. 27 69 16.117
14 g7317.t1 SMART SM01052 CAP_GLY_2 8 74 4.2E-29
5 g7317.t1 SUPERFAMILY SSF74924 Cap-Gly domain 6 115 2.49E-31

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values