General information for g7317.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Dynactin subunit 1.
Parent gene
- The parent gene g7317 is located on chr_2: 22880399..22881128 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7317 | g7317.t5 | isoform | g7317.t5 | 22880074 | 22881128 |
| chr_2 | g7317 | g7317.t5 | exon | g7317.t5.exon1 | 22880074 | 22880415 |
| chr_2 | g7317 | g7317.t5 | cds | g7317.t5.CDS1 | 22880084 | 22880415 |
| chr_2 | g7317 | g7317.t5 | exon | g7317.t5.exon2 | 22880484 | 22880823 |
| chr_2 | g7317 | g7317.t5 | cds | g7317.t5.CDS2 | 22880484 | 22880823 |
| chr_2 | g7317 | g7317.t5 | exon | g7317.t5.exon3 | 22880877 | 22881128 |
| chr_2 | g7317 | g7317.t5 | cds | g7317.t5.CDS3 | 22880877 | 22881128 |
| chr_2 | g7317 | g7317.t5 | TTS | g7317.t5 | 22881352 | 22881352 |
| chr_2 | g7317 | g7317.t5 | TSS | g7317.t5 | NA | NA |
Sequences
>g7317.t5 Gene=g7317 Length=934
CAACACAGACATGTCACAATTGGCACAATATTTATTAGATCATGAGTATGAAATCATGTC
TGTCACACAAAATGAAAAGGTTCAGCCTCCAATTGCACAGAGAGCACAAATTGTCAAGAA
ACATCTTGAAGAAACCAAAACGTTGACTGCTACATTAGAGAATCGCGATGCTGAAATTCG
TCAGCTTAAGATGAGTATAAAGATGAAACAAAATGAACTCTCTGAAATGCAAATTCGTAA
GGATTTGGCTGAAAAGAAACTTTCGGTACTTCAACAAGACCATGAATCTAATTCAGCGAG
ATTGCAGAAATTATTAGATGAAGCTACTGAAGCTCTTCGAAAGAAGGAGAAAGAATATGA
GGAGACAATGGATCATTTGCAGAGTGACATTGATTCTCTAGAAAATGAACGTGGTGTTTT
AAGAGAAAAACTTAAAACATATAGCAATAAGAAGGGAGATTTAAAGACAACCACAGCTCT
TGATATAACAGCAAGTTCGCCTCATATTGCACAAGAACTTACACTTTTACAAAAAGCACT
AAAAGACGAACGCGAATCTAGAATGAAATTGCAAGCTCAAGAATATGAAAAGATTCTAAA
GAGTCTTGCACCAATTCATGTTCCTAAACTTAGAGATCCAAAACTTGATGCACTTGATGA
AGAACTGAGAAAAGTTCGATATGATATGGTGATGTCGCTTGTTAAAGGATCAGAAATTCC
AACAACTAAAACAAAACATGGTAATTTTACAAAATTGGTTCAAGATCATAAAAATCGTCA
ACAGAAAATTCGTAATCATATAAATGCCAAGGTAGAGATGGTTGCAGGCGAAATAATGCA
AGAGTATTTAGATAGAAAACCTTTTAATGCAACATTATCTGGTGACTTTAAAACCTTTCC
AAAAGCAGAAGCTATTAAACAATTTCAAGGATAA
>g7317.t5 Gene=g7317 Length=307
MSQLAQYLLDHEYEIMSVTQNEKVQPPIAQRAQIVKKHLEETKTLTATLENRDAEIRQLK
MSIKMKQNELSEMQIRKDLAEKKLSVLQQDHESNSARLQKLLDEATEALRKKEKEYEETM
DHLQSDIDSLENERGVLREKLKTYSNKKGDLKTTTALDITASSPHIAQELTLLQKALKDE
RESRMKLQAQEYEKILKSLAPIHVPKLRDPKLDALDEELRKVRYDMVMSLVKGSEIPTTK
TKHGNFTKLVQDHKNRQQKIRNHINAKVEMVAGEIMQEYLDRKPFNATLSGDFKTFPKAE
AIKQFQG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7317.t5 | Coils | Coil | Coil | 49 | 147 | - |
| 3 | g7317.t5 | Coils | Coil | Coil | 170 | 190 | - |
| 1 | g7317.t5 | PANTHER | PTHR18916:SF6 | DYNACTIN SUBUNIT 1 | 1 | 287 | 2.4E-34 |
| 2 | g7317.t5 | PANTHER | PTHR18916 | DYNACTIN 1-RELATED MICROTUBULE-BINDING | 1 | 287 | 2.4E-34 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
