General information for g7323.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Pseudouridine-5’-phosphatase.
Parent gene
- The parent gene g7323 is located on chr_2: 22947479..22953181 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7323 | g7323.t3 | isoform | g7323.t3 | 22945378 | 22947479 |
| chr_2 | g7323 | g7323.t3 | exon | g7323.t3.exon1 | 22945378 | 22945755 |
| chr_2 | g7323 | g7323.t3 | exon | g7323.t3.exon2 | 22946591 | 22946834 |
| chr_2 | g7323 | g7323.t3 | cds | g7323.t3.CDS1 | 22946661 | 22946834 |
| chr_2 | g7323 | g7323.t3 | exon | g7323.t3.exon3 | 22946898 | 22947479 |
| chr_2 | g7323 | g7323.t3 | cds | g7323.t3.CDS2 | 22946898 | 22947128 |
| chr_2 | g7323 | g7323.t3 | TSS | g7323.t3 | 22947593 | 22947593 |
| chr_2 | g7323 | g7323.t3 | TTS | g7323.t3 | NA | NA |
Sequences
>g7323.t3 Gene=g7323 Length=1204
ATGACTGAGAAAAATATTAAGCCTGTGACTCACGTCATATTCGATATGGATGGTCTTTTA
TTAGGTGAGAACTTTATTATGCAATATTGTGCAAATTAAATGAAATACACACAAACGTGA
CGTTGAAAAAATTTAATAGATACGGAGCATGTATATGAAAAAGTGTTTCAAAAAGTGATA
TCAAAATACGGAAAGACACTTACACCAGAAGTTCGTGTCAAACTATTGGGTTCAACCGAA
AAACGAGCATGTGCGATTTGTGTTGATGATCTTGAATTAAATGTAAAAGTCGATGACTTT
ATTAGTGATTTTCGCAAGCTATCTTTGCAACGTTTACCTAATGTCGAATTTATGCCTGGC
GCTGAAAAACTAATTCTTCACCTTTATTCACACAAAATTCCAATTTGCGTTGCAACTTCA
AGTGGTGAAGAAAGTGTTGCCATTAAGATACAAAAGCACAAGCGCATTTTCAATTTATTT
GATCACATTACTAAAGGGACAGAAGTTAAAGAGGGAAAACCAGCACCAGATATTTTTCTC
TTGGCAGCTAGTCGATTTAATCCAAAGGCTGAATCAATAAATTGTCTTGTTATAGAAGAT
GCACCGAATGGAGTACAAGGAGCTCTTTCTGCTGGCATGCAAGTGGCAATGATTCCTGCA
GATTTCATTACTGAAGAACAAAAGAGTAAAGCGACAATTGTATTTAAATCGTTAGAAGAA
TTTAAACCTGAGCTTTTTGGACTTCCTCCATTCTAATCCTGTATTATTTTCATTGTTTCA
CTAATCAAGGTAAAATCTAGTTCTGATATTTTTATTATGAATTAGGGAACATTTACCCTA
ATTAAATAATCAAAAACTAATTCATGAAAGTATCAAACTATTTAATCTATTCTTAATACA
GAGTGATTTTTTTAATTAGTTCCATTATTTGTATACATAGTGTATCGATTTTACTTTCTT
GAAATTTCAACAAAATAAGCTTTATAATTTTGTTACCTCTCACAAAATATACTATAGCAA
ACAGATAAGTAACAATAACAGATATATAAATAAAGATGACGATTTTTAACTTGAAAAAAA
TCTTGGCATTGAAAATTATTCTGTTTGTATTATACTACATTGTAGACATAGCAAAAAAGT
TTTTAAGTTGATTGCATTATAAAAATTAATATAATAATAAAATATTTAATGTCCAATTAT
GCAA
>g7323.t3 Gene=g7323 Length=134
MPGAEKLILHLYSHKIPICVATSSGEESVAIKIQKHKRIFNLFDHITKGTEVKEGKPAPD
IFLLAASRFNPKAESINCLVIEDAPNGVQGALSAGMQVAMIPADFITEEQKSKATIVFKS
LEEFKPELFGLPPF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7323.t3 | Gene3D | G3DSA:3.40.50.1000 | - | 1 | 130 | 0 |
| 2 | g7323.t3 | PANTHER | PTHR18901 | 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 | 1 | 134 | 0 |
| 1 | g7323.t3 | Pfam | PF13419 | Haloacid dehalogenase-like hydrolase | 2 | 101 | 0 |
| 3 | g7323.t3 | SUPERFAMILY | SSF56784 | HAD-like | 1 | 132 | 0 |
| 5 | g7323.t3 | TIGRFAM | TIGR01509 | HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 | 39 | 100 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed