General information for g7323.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Pseudouridine-5’-phosphatase.
Parent gene
- The parent gene g7323 is located on chr_2: 22947479..22953181 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7323 | g7323.t7 | isoform | g7323.t7 | 22945378 | 22947616 |
| chr_2 | g7323 | g7323.t7 | exon | g7323.t7.exon1 | 22945378 | 22945935 |
| chr_2 | g7323 | g7323.t7 | exon | g7323.t7.exon2 | 22946591 | 22946834 |
| chr_2 | g7323 | g7323.t7 | cds | g7323.t7.CDS1 | 22946661 | 22946834 |
| chr_2 | g7323 | g7323.t7 | exon | g7323.t7.exon3 | 22946898 | 22947340 |
| chr_2 | g7323 | g7323.t7 | cds | g7323.t7.CDS2 | 22946898 | 22947340 |
| chr_2 | g7323 | g7323.t7 | exon | g7323.t7.exon4 | 22947416 | 22947534 |
| chr_2 | g7323 | g7323.t7 | cds | g7323.t7.CDS3 | 22947416 | 22947479 |
| chr_2 | g7323 | g7323.t7 | exon | g7323.t7.exon5 | 22947591 | 22947616 |
| chr_2 | g7323 | g7323.t7 | TSS | g7323.t7 | 22947593 | 22947593 |
| chr_2 | g7323 | g7323.t7 | TTS | g7323.t7 | NA | NA |
Sequences
>g7323.t7 Gene=g7323 Length=1390
AAACTATACACAGAAAAGGCGACAGTTTTTGAATCGTCATCATCGAATAAAGAATAACGA
TTTTTTATAACCAGTGTAAACATGACTGAGAAAAATATTAAGCCTGTGACTCACGTCATA
TTCGATATGGATGGTCTTTTATTAGATACGGAGCATGTATATGAAAAAGTGTTTCAAAAA
GTGATATCAAAATACGGAAAGACACTTACACCAGAAGTTCGTGTCAAACTATTGGGTTCA
ACCGAAAAACGAGCATGTGCGATTTGTGTTGATGATCTTGAATTAAATGTAAAAGTCGAT
GACTTTATTAGTGATTTTCGCAAGCTATCTTTGCAACGTTTACCTAATGTCGAATTTATG
CCTGGCGCTGAAAAACTAATTCTTCACCTTTATTCACACAAAATTCCAATTTGCGTTGCA
ACTTCAAGTGGTGAAGAAAGTGTTGCCATTAAGATACAAAAGCACAAGCGCATTTTCAAT
TTATTTGATCACATTACTAAAGGGACAGAAGTTAAAGAGGGAAAACCAGCACCAGATATT
TTTCTCTTGGCAGCTAGTCGATTTAATCCAAAGGCTGAATCAATAAATTGTCTTGTTATA
GAAGATGCACCGAATGGAGTACAAGGAGCTCTTTCTGCTGGCATGCAAGTGGCAATGATT
CCTGCAGATTTCATTACTGAAGAACAAAAGAGTAAAGCGACAATTGTATTTAAATCGTTA
GAAGAATTTAAACCTGAGCTTTTTGGACTTCCTCCATTCTAATCCTGTATTATTTTCATT
GTTTCACTAATCAAGGTAAAATCTAGTTCTGATATTTTTATTATGAATTAGGGAAAAACA
TATAAAATTTTATTTTGGAAAAGTGACAAATATTCTGACTCCAACGTTGATTTAGTAAAA
TAATAGGAGAATTTATTTATCGTTTAGTGAAACAATCATAAAAATTGGTTTAGTAATAAG
TGAGAAAACTTCGTATTCAAAGTTGACCGAAAGAAATTTTGTCCCGAATTAGGAACATTT
ACCCTAATTAAATAATCAAAAACTAATTCATGAAAGTATCAAACTATTTAATCTATTCTT
AATACAGAGTGATTTTTTTAATTAGTTCCATTATTTGTATACATAGTGTATCGATTTTAC
TTTCTTGAAATTTCAACAAAATAAGCTTTATAATTTTGTTACCTCTCACAAAATATACTA
TAGCAAACAGATAAGTAACAATAACAGATATATAAATAAAGATGACGATTTTTAACTTGA
AAAAAATCTTGGCATTGAAAATTATTCTGTTTGTATTATACTACATTGTAGACATAGCAA
AAAAGTTTTTAAGTTGATTGCATTATAAAAATTAATATAATAATAAAATATTTAATGTCC
AATTATGCAA
>g7323.t7 Gene=g7323 Length=226
MTEKNIKPVTHVIFDMDGLLLDTEHVYEKVFQKVISKYGKTLTPEVRVKLLGSTEKRACA
ICVDDLELNVKVDDFISDFRKLSLQRLPNVEFMPGAEKLILHLYSHKIPICVATSSGEES
VAIKIQKHKRIFNLFDHITKGTEVKEGKPAPDIFLLAASRFNPKAESINCLVIEDAPNGV
QGALSAGMQVAMIPADFITEEQKSKATIVFKSLEEFKPELFGLPPF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7323.t7 | Gene3D | G3DSA:3.40.50.1000 | - | 12 | 214 | 0 |
| 5 | g7323.t7 | Gene3D | G3DSA:1.10.150.240 | Putative phosphatase; domain 2 | 23 | 90 | 0 |
| 2 | g7323.t7 | PANTHER | PTHR18901 | 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 | 3 | 226 | 0 |
| 1 | g7323.t7 | Pfam | PF13419 | Haloacid dehalogenase-like hydrolase | 12 | 193 | 0 |
| 7 | g7323.t7 | SFLD | SFLDG01129 | C1.5: HAD, Beta-PGM, Phosphatase Like | 8 | 220 | 0 |
| 8 | g7323.t7 | SFLD | SFLDG01135 | C1.5.6: HAD, Beta-PGM, Phosphatase Like | 8 | 220 | 0 |
| 3 | g7323.t7 | SUPERFAMILY | SSF56784 | HAD-like | 9 | 224 | 0 |
| 6 | g7323.t7 | TIGRFAM | TIGR01509 | HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 | 91 | 192 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
