Gene loci information

Transcript annotation

  • This transcript has been annotated as Phosphoglucomutase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7326 g7326.t1 TSS g7326.t1 22963324 22963324
chr_2 g7326 g7326.t1 isoform g7326.t1 22963418 22965208
chr_2 g7326 g7326.t1 exon g7326.t1.exon1 22963418 22964212
chr_2 g7326 g7326.t1 cds g7326.t1.CDS1 22963418 22964212
chr_2 g7326 g7326.t1 exon g7326.t1.exon2 22964266 22964492
chr_2 g7326 g7326.t1 cds g7326.t1.CDS2 22964266 22964492
chr_2 g7326 g7326.t1 exon g7326.t1.exon3 22964554 22965208
chr_2 g7326 g7326.t1 cds g7326.t1.CDS3 22964554 22965208
chr_2 g7326 g7326.t1 TTS g7326.t1 22965300 22965300

Sequences

>g7326.t1 Gene=g7326 Length=1677
ATGACATTAACAGTTCGCTCTGTCCCAACGACTCCATTTGAAGGACAAAAACCGGGAACA
AGTGGATTGCGTAAAAAAGTTAAAGTTTTTGCTGAGAAAAACTACACTGAGAATTTTGTT
CAATGCATTCTTGATGCAGCTGGTGAGCAAGCAGTTAATGGGGCTGTCTTGGTAGTCGGT
GGAGATGGTAGATATTTTCTTAAAGAAGCTGTTGACATTATTATTAAAATTTGTGCTGGA
AATGGAGTTGGACGATTACTTGTCGGTCAAAATGGAATTCTTTCAACACCTGCCGTTTCA
GCACTTATTCGCTCTAACAAGGCAAATGGTGGAATAATTTGTACTGCCTCACATAATCCC
GGTGGACCTGAAAACGATTTTGGAATCAAATTTAATTGTGAAAATGGTGGACCAGCACCG
GATGCTTTTACAAATAAAATGTATGATCTCTCAAAGGTCATTAAGGAATATAAAGTAGTT
GAAGGCATCAATGTTGATTTGAATAAAATTGGAACAAACAAATTTGAAGTAAATGGCAAA
TCATTTGTTGTTGATATCATTGATTCAGTCGCAAATTATGTCGAGTTGATGAAAGAAATT
TTTGATTTTGGAAAACTCAAAGCTTTCGTAAGCGGTTCAAAACCATTGAAAATGAGAATC
GATGCCCTAAATGGTGTTACTGGACCATATGTACGAGAGATTTTCATCAATCAACTTGGT
GCAACTGATGATAATGTTGTGCATACGATTCCTTTACCTGATTTTGGTGGTCTTCATCCT
GATCCAAATTTAACTTATGCAAAAGACCTTGTTGATACAGTTTCTGCGGGAGATTATGAC
ATAGGTGCAGCTTTTGATGGTGATGGTGATAGAAACATGATTTTAGGAAACAAGGCCTTT
TTCGTTACACCAAATGATTCACTTGCTGTCATTGCTGATTATGTTGACTGTATTCCGTAC
TTCAAGAAAAATGGTGTTCAAGGTTTTGCAAGAAGTATGCCTACAGCTGCTGCTTTAGAT
CGTGTGGCTAAAGCGAAAGGTCAAGAAGTTTTTGAGACTCCAACAGGTTGGAAATATTTT
GGTAATTTGATGGATGCTAACCGCTTATGTCTCTGCGGCGAAGAATCATTTGGTACTGGT
TCAAATCATATTCGTGAGAAAGATGGAATTTGGGCTGCACTTGCATGGCTCTCAATAATG
GAGCATACAAAGAAATCAATTGAGGAAATTTGCAAGGAGCATTGGAAAAAATATGGTCGT
AACTACTTTACACGTTACGATTATGAAGAATGTGAACTTGCACCGTGCAATCAAATGATG
ACTGACTTGGAAAATCTCATCACAAAGCCAGACTTTGTTGGTCGTGAATTTTCGAATGGA
GGAAAGACTTATAAAATAAAACTTGGCGATAATTTCGGATATACCGATCCAATTGACGGT
TCTGTTGCTACTAAGCAAGGTCTTCGCATCATTTTTGAAGATGGCTCGAGAATTGTTATG
CGTCTATCAGGTACTGGCAGCTCTGGGGCAACTGTGCGTCTTTATATTGAAGCATATGAG
GCAACTAATGTCTTAGGCGCTGCTGCTGATATGCTCAAGCCATTAATCAATATTGCTCTC
GAAATTTCACAATTACCAAAGTACACAGGAAGAAATGCTCCGACTGTCATTACCTAA

>g7326.t1 Gene=g7326 Length=558
MTLTVRSVPTTPFEGQKPGTSGLRKKVKVFAEKNYTENFVQCILDAAGEQAVNGAVLVVG
GDGRYFLKEAVDIIIKICAGNGVGRLLVGQNGILSTPAVSALIRSNKANGGIICTASHNP
GGPENDFGIKFNCENGGPAPDAFTNKMYDLSKVIKEYKVVEGINVDLNKIGTNKFEVNGK
SFVVDIIDSVANYVELMKEIFDFGKLKAFVSGSKPLKMRIDALNGVTGPYVREIFINQLG
ATDDNVVHTIPLPDFGGLHPDPNLTYAKDLVDTVSAGDYDIGAAFDGDGDRNMILGNKAF
FVTPNDSLAVIADYVDCIPYFKKNGVQGFARSMPTAAALDRVAKAKGQEVFETPTGWKYF
GNLMDANRLCLCGEESFGTGSNHIREKDGIWAALAWLSIMEHTKKSIEEICKEHWKKYGR
NYFTRYDYEECELAPCNQMMTDLENLITKPDFVGREFSNGGKTYKIKLGDNFGYTDPIDG
SVATKQGLRIIFEDGSRIVMRLSGTGSSGATVRLYIEAYEATNVLGAAADMLKPLINIAL
EISQLPKYTGRNAPTVIT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
19 g7326.t1 CDD cd03085 PGM1 6 558 0e+00
18 g7326.t1 Gene3D G3DSA:3.40.120.10 - 4 196 0e+00
17 g7326.t1 Gene3D G3DSA:3.40.120.10 - 197 299 0e+00
16 g7326.t1 Gene3D G3DSA:3.40.120.10 - 300 399 0e+00
15 g7326.t1 Gene3D G3DSA:3.30.310.50 Major birch pollen allergen Bet v 1 400 558 0e+00
5 g7326.t1 PANTHER PTHR22573:SF37 PHOSPHOGLUCOMUTASE-1 4 558 0e+00
6 g7326.t1 PANTHER PTHR22573 PHOSPHOHEXOMUTASE FAMILY MEMBER 4 558 0e+00
7 g7326.t1 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 110 124 0e+00
10 g7326.t1 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 215 234 0e+00
9 g7326.t1 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 251 264 0e+00
8 g7326.t1 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 279 294 0e+00
3 g7326.t1 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 16 157 0e+00
2 g7326.t1 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 192 295 0e+00
1 g7326.t1 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 304 418 0e+00
4 g7326.t1 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 483 522 1e-07
14 g7326.t1 SUPERFAMILY SSF53738 Phosphoglucomutase, first 3 domains 4 221 0e+00
12 g7326.t1 SUPERFAMILY SSF53738 Phosphoglucomutase, first 3 domains 191 302 0e+00
13 g7326.t1 SUPERFAMILY SSF53738 Phosphoglucomutase, first 3 domains 287 425 0e+00
11 g7326.t1 SUPERFAMILY SSF55957 Phosphoglucomutase, C-terminal domain 420 558 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005975 carbohydrate metabolic process BP
GO:0071704 organic substance metabolic process BP
GO:0016868 intramolecular transferase activity, phosphotransferases MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values