Gene loci information

Transcript annotation

  • This transcript has been annotated as Phosphoglucomutase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7326 g7326.t9 TSS g7326.t9 22963324 22963324
chr_2 g7326 g7326.t9 isoform g7326.t9 22964266 22965208
chr_2 g7326 g7326.t9 exon g7326.t9.exon1 22964266 22964492
chr_2 g7326 g7326.t9 cds g7326.t9.CDS1 22964347 22964492
chr_2 g7326 g7326.t9 exon g7326.t9.exon2 22964554 22965208
chr_2 g7326 g7326.t9 cds g7326.t9.CDS2 22964554 22965208
chr_2 g7326 g7326.t9 TTS g7326.t9 22965300 22965300

Sequences

>g7326.t9 Gene=g7326 Length=882
TATGCAAAAGACCTTGTTGATACAGTTTCTGCGGGAGATTATGACATAGGTGCAGCTTTT
GATGGTGATGGTGATAGAAACATGATTTTAGGAAACAAGGCCTTTTTCGTTACACCAAAT
GATTCACTTGCTGTCATTGCTGATTATGTTGACTGTATTCCGTACTTCAAGAAAAATGGT
GTTCAAGGTTTTGCAAGAAGTATGCCTACAGCTGCTGCTTTAGATCGTGTGGCTAAAGCG
AAAGGTCAAGAAGTTTTTGAGACTCCAACAGGTTGGAAATATTTTGGTAATTTGATGGAT
GCTAACCGCTTATGTCTCTGCGGCGAAGAATCATTTGGTACTGGTTCAAATCATATTCGT
GAGAAAGATGGAATTTGGGCTGCACTTGCATGGCTCTCAATAATGGAGCATACAAAGAAA
TCAATTGAGGAAATTTGCAAGGAGCATTGGAAAAAATATGGTCGTAACTACTTTACACGT
TACGATTATGAAGAATGTGAACTTGCACCGTGCAATCAAATGATGACTGACTTGGAAAAT
CTCATCACAAAGCCAGACTTTGTTGGTCGTGAATTTTCGAATGGAGGAAAGACTTATAAA
ATAAAACTTGGCGATAATTTCGGATATACCGATCCAATTGACGGTTCTGTTGCTACTAAG
CAAGGTCTTCGCATCATTTTTGAAGATGGCTCGAGAATTGTTATGCGTCTATCAGGTACT
GGCAGCTCTGGGGCAACTGTGCGTCTTTATATTGAAGCATATGAGGCAACTAATGTCTTA
GGCGCTGCTGCTGATATGCTCAAGCCATTAATCAATATTGCTCTCGAAATTTCACAATTA
CCAAAGTACACAGGAAGAAATGCTCCGACTGTCATTACCTAA

>g7326.t9 Gene=g7326 Length=266
MILGNKAFFVTPNDSLAVIADYVDCIPYFKKNGVQGFARSMPTAAALDRVAKAKGQEVFE
TPTGWKYFGNLMDANRLCLCGEESFGTGSNHIREKDGIWAALAWLSIMEHTKKSIEEICK
EHWKKYGRNYFTRYDYEECELAPCNQMMTDLENLITKPDFVGREFSNGGKTYKIKLGDNF
GYTDPIDGSVATKQGLRIIFEDGSRIVMRLSGTGSSGATVRLYIEAYEATNVLGAAADML
KPLINIALEISQLPKYTGRNAPTVIT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g7326.t9 Gene3D G3DSA:3.40.120.10 - 8 107 0
7 g7326.t9 Gene3D G3DSA:3.30.310.50 Major birch pollen allergen Bet v 1 108 266 0
3 g7326.t9 PANTHER PTHR22573:SF37 PHOSPHOGLUCOMUTASE-1 1 266 0
4 g7326.t9 PANTHER PTHR22573 PHOSPHOHEXOMUTASE FAMILY MEMBER 1 266 0
1 g7326.t9 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 12 126 0
2 g7326.t9 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 191 230 0
6 g7326.t9 SUPERFAMILY SSF53738 Phosphoglucomutase, first 3 domains 1 133 0
5 g7326.t9 SUPERFAMILY SSF55957 Phosphoglucomutase, C-terminal domain 128 266 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005975 carbohydrate metabolic process BP
GO:0071704 organic substance metabolic process BP
GO:0016868 intramolecular transferase activity, phosphotransferases MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values