General information for g7327.t21
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ATP synthase subunit beta, mitochondrial.
Parent gene
- The parent gene g7327 is located on chr_2: 22966903..22969574 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7327 | g7327.t21 | isoform | g7327.t21 | 22966903 | 22968336 |
| chr_2 | g7327 | g7327.t21 | exon | g7327.t21.exon1 | 22966903 | 22967476 |
| chr_2 | g7327 | g7327.t21 | cds | g7327.t21.CDS1 | 22966904 | 22967476 |
| chr_2 | g7327 | g7327.t21 | exon | g7327.t21.exon2 | 22967538 | 22967590 |
| chr_2 | g7327 | g7327.t21 | cds | g7327.t21.CDS2 | 22967538 | 22967590 |
| chr_2 | g7327 | g7327.t21 | exon | g7327.t21.exon3 | 22968291 | 22968336 |
| chr_2 | g7327 | g7327.t21 | cds | g7327.t21.CDS3 | 22968291 | 22968336 |
| chr_2 | g7327 | g7327.t21 | TSS | g7327.t21 | 22968351 | 22968351 |
| chr_2 | g7327 | g7327.t21 | TTS | g7327.t21 | NA | NA |
Sequences
>g7327.t21 Gene=g7327 Length=673
ATGTTTACGGCGGTACGAGCTTCGAAATTACTACAGAATATAGCGACAAGAAGCTATGCA
GCTAAGGCCGCAAAAGCTGCTGCTGGTGCTCAGGGCAAAGTTGTTGCTGTCATCGGTGCC
GTTGTGGACGTTCAATTCGATGACAACTTGCCACCAATTTTGAATGCACTCGAGGTTCAA
GATCGCCAGACTCGTTTAGTCTTGGAAGTCGCTCAGCATTTGGGAGAAAACACTGTCCGC
ACAATCGCAATGGACGGTACAGAAGGTTTAGTTCGTGGACAACGCGTAGCTGACACTGGT
TCACCAATTCGTATCCCAGTCGGTGCTGAAACTTTAGGACGCATTATCAATGTCATTGGC
GAGCCAATTGATGAACGTGGTCCAATTGAAACCGACAAATCAGCTCCAATTCACGCTGAA
GCTCCAGAATTTGTTGAAATGAGTGTACAGCAAGAAATTCTTGTCACTGGTATCAAGGTT
GTAGATTTGTTGGCCCCATACGCTAAGGGTGGTAAAATTGGTCTCTTTGGTGGTGCTGGA
GTAGGAAAAACAGTTTTGATTATGGAACTTATTAACAATGTTGCCAAAGCTCATGGTGGT
TATTCAGTCTTTGCTGGTGTCGGAGAACGTACACGTGAGGGTAACGATTTGTACAATGAA
ATGATTGAGTCCG
>g7327.t21 Gene=g7327 Length=224
MFTAVRASKLLQNIATRSYAAKAAKAAAGAQGKVVAVIGAVVDVQFDDNLPPILNALEVQ
DRQTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQRVADTGSPIRIPVGAETLGRIINVIG
EPIDERGPIETDKSAPIHAEAPEFVEMSVQQEILVTGIKVVDLLAPYAKGGKIGLFGGAG
VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYNEMIES
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g7327.t21 | CDD | cd18115 | ATP-synt_F1_beta_N | 34 | 103 | 0 |
| 8 | g7327.t21 | Gene3D | G3DSA:2.40.10.170 | - | 18 | 102 | 0 |
| 7 | g7327.t21 | Gene3D | G3DSA:3.40.50.300 | - | 103 | 224 | 0 |
| 3 | g7327.t21 | PANTHER | PTHR15184 | ATP SYNTHASE | 22 | 224 | 0 |
| 4 | g7327.t21 | PANTHER | PTHR15184:SF60 | ATP SYNTHASE SUBUNIT BETA-1, MITOCHONDRIAL-RELATED | 22 | 224 | 0 |
| 1 | g7327.t21 | Pfam | PF02874 | ATP synthase alpha/beta family, beta-barrel domain | 34 | 100 | 0 |
| 2 | g7327.t21 | Pfam | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain | 157 | 223 | 0 |
| 5 | g7327.t21 | SUPERFAMILY | SSF50615 | N-terminal domain of alpha and beta subunits of F1 ATP synthase | 30 | 102 | 0 |
| 6 | g7327.t21 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 104 | 223 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046034 | ATP metabolic process | BP |
| GO:1902600 | proton transmembrane transport | BP |
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
