Gene loci information

Transcript annotation

  • This transcript has been annotated as HEAT repeat-containing protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7341 g7341.t1 isoform g7341.t1 23118390 23126775
chr_2 g7341 g7341.t1 exon g7341.t1.exon1 23118390 23119552
chr_2 g7341 g7341.t1 cds g7341.t1.CDS1 23118390 23119552
chr_2 g7341 g7341.t1 exon g7341.t1.exon2 23119606 23119868
chr_2 g7341 g7341.t1 cds g7341.t1.CDS2 23119606 23119868
chr_2 g7341 g7341.t1 exon g7341.t1.exon3 23119925 23124531
chr_2 g7341 g7341.t1 cds g7341.t1.CDS3 23119925 23124531
chr_2 g7341 g7341.t1 exon g7341.t1.exon4 23125274 23125306
chr_2 g7341 g7341.t1 cds g7341.t1.CDS4 23125274 23125306
chr_2 g7341 g7341.t1 exon g7341.t1.exon5 23125371 23125904
chr_2 g7341 g7341.t1 cds g7341.t1.CDS5 23125371 23125904
chr_2 g7341 g7341.t1 exon g7341.t1.exon6 23125969 23126775
chr_2 g7341 g7341.t1 cds g7341.t1.CDS6 23125969 23126775
chr_2 g7341 g7341.t1 TTS g7341.t1 23126818 23126818
chr_2 g7341 g7341.t1 TSS g7341.t1 NA NA

Sequences

>g7341.t1 Gene=g7341 Length=7407
ATGTCGACATCTTTAAGAGAGCAACTTCTTCGATTACAAACGCCACAAGCATCTCAATTT
GTTGATAAAAAGAAACGAGATTCAATTCTATTTAGTTCAAAAGATGCAGCAACGAAGAGT
CGTGAAACAATATATGAAATTGGAATAAGTGGACTTCGTGAATTGATAGAAATCGACGAT
TCTTTGACAGAATTTGAAAATACGCTATTCAATTTCACAGCAAAAGATGTTCAACGTGCT
GTTGAAACAAAGGAAGTCAATAAACTTCTTGACAAGAACATCAGGCGCTTTATGTATCAT
CTTTCACCTTATTTTATGATTCCTTCATCACACAAGTGCTTAGAATGGTTAATTCGTCGT
TTCAACATAAATTTGTATAACAGAGAAGAAATGTTAATGCTTATTCTCCCGTATCATCAA
ACTAATATGTTTGTTCGATGTGTTCAAACAATGAAATTCACTGATTCAAATGATAAATGG
AATTTCTTTAATGAAGTAAAAAAATCTTCTTCACCTCTTTCGAAAATTACTTTATGGAAT
CATGGTGTTTCACAACCTTCCTTTTTGGATTTTGTTGGTAAATTTACATATAATGCAGTG
AAAGAACTCGGTCATAATGCGGGAAAATTGCAAACAATGATATCTTTTTACTTTACAACT
ATTGCTGGAACATTAGAACAAGCTACTAAAATCAATGACAATCACATTTTGGGAGCTGCG
AGATATTTGAATCATACTTATAATTCAAGTATCATTGATTATACATCTGCAGGATATATG
ATAACAGCTCAATTAGTGGCCAAAGCTCGCTTGTCAACAGAAATTCTTTACATGATTATG
AACAAAATGACTGAAACTATACCACTGAAGCTATCTCGTGAATGCCTTCTTTTACTTGCA
CTTATATTTCAAACACAATCAGAAACATTAGTTATATCAGATAAAACTTTGGAAAATTTG
TTAGCTTTCGATCGATTTCTGTTTGCATTGAAAGAAATTATGAGAGAGGATAAAATTAAA
ACAGAATTTTATAGAGCATTGATTTATAAATTGCTTGTGAAATTGCAAGACAAAAATGTT
GATTTCAACAAATATTGCGACATTTGTGAGAAAATATTGTATGAAGTAGATATGGATGAT
GAACTTGCTCGTGTAATCATAAGAACTGTATTGGATAGCTATATTCAAGAAGACTCTGAA
CCACAACCAATTCAAGAGAAATCAAGTCAGGATGAGAGTGAAATTATATTATTAGACTCT
GATGATGAAGAGAATATTCCATTGAAATCACAGAATGTTACAAAATGGTATTCAATGTTG
CTCAAAAAGTTAGAAAGACAATATCCACTCGCATTTGATTTGGTTGTAAAAGATATAATG
ACAAGAAATCCTCAAAGAAAACGAAATGGCTTAAAGAATGTTTTAGGATTTTTGATGAAC
GTCTCATGCAGTAATAATGATACCGATATATTTGAAAATCTTTATCATCATAATTTTCAA
GTAAGATCAAAAGCGGTATCTTATTTAGTTAAAAATTTCCACAAGATTGAATTAACGCCG
GAAAATGAACAAATACTAAAATTAACTTTAACTGAGAGATTAAACGATGAAAGCGTAGAA
GTTGTTGCTGAAATTCTTAAAATGAATTTAAATTTCTTAATAAAAATCATTGGTGTGGAT
GAGCTGATTGCAAAACTAACCAAGATTATAATGAAGTATTGGAGAAATAGTGAGAAATGG
GAGAAAAATGCTTCATCAGCTTTAAAATTTTTGATCACTTTATGTGAGAATAATGACTCA
AATATTGCTCTATTTAGCATTTTACCATTTATGTTTGAATGCAACACAAATGCAAAGCCG
TTTGCTTTTGAAAATAACTCAAAAATAGTTTCAAATATTAATGAAATGCTCGAAGATCAT
GCAAAAGTGCCATCAAGTGAATCATTATTGTCAACAATTCAAAATGTGCTCATTAATAAT
CATCATTTAGGCAGTTTTAGTGAAAATTTCGCATTCTATTTGCTTTCAAATTCGTTTACT
GCAACTACAAAAGATCCAGAATTTTCAATTGAAGCATTTCAAATTATTCAAACAATCACG
TCATCAGCAAATGTCAAATTTAACCAGATGGATATAAGTGATGTCAACATAATGAAAAGA
AATGAGATATCAATCAAAATATTATCGCAAGTTTTAATTGCTCTCATTGATGCAACAAAA
TTTACAATTCAAGATATTAATTTTTCCAATCAGAATACGGAAATGAAATTGATTTTTAAG
ATTTTCAAGTTCACTATTGATTTGTTCTTTAAAGTCGATCCATCTTATCGTGAAAATGTC
AATACGCTAATGATAGGATTGCTAGAAAAAGTTTGTGCATCTGATGAGACGAAAAAATTG
AATTTCTTCTCACAATTCTGTGTTATGCATGCTGCTATTTGCAATAATAATATGCTCGAG
TTTCAAGCTCGTACCATGGGACTTTTGAATCATGTTCTGAAAAGTGGGCAAATGAAAGAA
AAGGATTATTCAAATGAAATGTATCAAAACATTCTTATCTCTCTTTCTTCGCCTATTACA
AAAATTCGTGAATTTGGCATGGAACTTATTTCTACATTAGTGGATAAAAATATTAGTGGT
AAATGGAAATTTCTTCTTGATAAATTATCTGAGAGAAAGGATGAAATTCTTATGGATTGT
GAGCAAATTCCAATGATCATTTATCTTTTAACAAACAAGAAAAGTTCAAAGAATATGCAA
GAAATTATTGAGTCAATTTTGGTACGAATAGCTGATGATAAAACATTTGATTACATTCAG
TCAGAGTTATTAAAAATTCTTAAGTACTTTAATGATCAAAAAGTACTGGATATTTCAATA
CAAATTGCAACAAAAATTATAGATGAATTTAATAGTGAAAACTTTTATTTAAATGAAAGT
TATGCCACAATCATCAAATTGGTTCTTATGAAATTTAATCAAGAAACTGTTAGTAATCTT
TGGAATTTGGCATTGAAATCATTAAAGTGTCATTACATAATGAATGATGATGGAAAAATT
ATTACACCTTCTATTCTAGTGCTTCAATCAATTGACAATGAATTGTTTTATAAACTTCAT
CCCAATCACAAAATGCAAATTTTCGAAGCCATTATAGAGTGTTCAATGAATGAACAAGCG
AGAATTGTTCAAGCAGCACAAAAAGTATTTTTCGAAATTAATATCGACTACAAGCTAATT
CAAAATGTGTTGCTGAAATTTCCGAAATGTCTTAATATTAGCGATCGAATGGCTTTGTCA
TATGAATGGAAATTTGGTATTACTTTACTTGAGTTACTGCAAAATAAATCTGAAGGAACT
GATGGGCATCATGAACTTTTACCAGTTCTTTTTGAAATTCTCTCAACATGTCTCAACTCG
GGTGACCAATCTGAAATTGAATATTTGAAGCAAATCATTTTGTCTTTGATTTTATCAATT
TGCAAGAAAATTTCTCCAGATGGAAGAAAGCAACAAAAATTTATCAATATTAATGATTCA
ACATTCAAAACGGATTTGATAATTAAATGTATAAAGGAATCGCAAAATCCACAGACTCAT
CATCATTCATTATTATTACTCGCACATCTGGCGCTCATGATTCCTGAACAAGTGTTACGT
GACATAACTACTATTTTTACTTTTGTTGGAACAGCTCTTGTGCGTCACGATGATTCTTAT
AGTTTTCAAATTATCACGAAAATTATTGAGAACGTTATTCCGAATCTGCTGAAAAATAAT
AATGATAAAGAGGTGATTTCAATTTTGAGAACTTTTGCTACGATTGCTTTAGATGTCCCA
GTTCATCGTAGAATGATGCTGTATGTAAAACTTTTAGACACACTTGGTGCTGAAAAATAT
TTATGGATGTTTATAGCATTATTACTTGAGACGCAAGTGAAACAGCCCAAGACAAAAGAA
GAAGATTTGCCACCACGTTTACAAGTCGCTCTTGCAATTTCAAAAGAATTTGATTTAAAA
ACAGTTATTGTATCTACAACTTCGCTTGTCATTTATCTTAAAGAGTTACCACTAACAATT
GATATCAATAAGCAATATATTCATACAACTATTGAGGACGATATTTTCCCATTAGAAACA
CATACAAATAAAAATATGCGTCATTTTAAATATCTCATTACACTATTCATCAAGCACATC
TTGGAATCACCTGAAATTTCAAATAAAACTTATCAAATGAATATCGAACAGGTTCATGCA
ATGAAAACTCACTTTCAAAATCTCATTTTGAATACACTAATTTGGTTGCCTGATGTTAAC
AAGTTAATTGAAATGAAACAAAATGAAGTCTATTGGCAACTTATTTTGCAAATTTATTTC
GATATTTTGGAAGCGACTATAGCACTGCTTGCTCCTGACATGCTTCTCATTGTGGTCGAG
CGACTTATTGAACATGATAATTTGATTGTTCGTAAAAAAGTGATTGAACTTTTGAATAGA
AAACTGGAAGATGATTATTTCAAATCATGTGCAAATGAAAAGATTTTGAAAATGATGGAG
CCATTAAAGAATGTTTGCGAAAGAATTGGAGCAAATGATTTATTATCACATGAAGAAAGT
GTTCAGCAATTGGCATTAGTTTCTATAAAATTACTATCCAGAAAATTATCAGAAGATTAT
CCAGATCAATTTATTGAATGCCTAAATCATTTGACAGCAGTCATAAATTGCAAAACACTT
CGAAAGACAACAACAATTAATTTGATAGATTGTGTTGCCGAATTATTAAGTGATTTGAAG
GTTTATGGAATATCATTACTTGGAAAATTCTTGCCAAATTTGATAAATTTACTTGTTTTG
CCAGAATCACCTAGTTATAATCTTCTTTATTCAGTCACATCATCACTATTGAAAATTGTT
GAAGCTGTTCCACTTTTTATGAGCCCATATCTCGTGCAAATCATCTCTCAATTGATTAAA
ATTGCACCACAATTGAAAACCATCCAGGACACAAAAATTTCATACATCGTTCAGAAAATT
AAAAAGATTTGGGAATCAATGTCACAGATGATACCATTAAGAGTTTTATATCCGTCGATT
GATGAAATCTACGATAGCATAAATCAAAAGCAGCAATTTAATTCTGTAGCTCCGTTGATG
GAATTTATGCATGAAATATTCAAGCATGTCGAGACAAAAGACATTCGAGATTTTCAAGCT
GAATTGACTGAATTTTTCCTTAAAATAATTCGATTCAGATGTGAAGCAACAAAGACAAAT
AACATGCAATTTAATGAAATCAATGATATTGAAGGCTCCATCATGAGGGCATTAATTTCT
TTAATTTTGAAATTATCGGAAGGCAGCTTTCGTCCGCTTTTTGAAAATATCACAAATTGG
GCAATTAAAGATAAAGAAGATGACGATAATCGATTAATTACGTTCTTCAGAATTACAACA
GAAGTGTCAGCCGCTCTCAAATCATTGTTTTTACTGTTTGCGTCTGATGTTGTTGATTCG
GCCAGTCAACTTCTTGACAAATGCAATTCATCAAAGGAAAATGAAGAAGGCCTTTGTTTT
GGTAATGATACAGAAAAAAATTTATATCTTATTGAAAATATTTTGCAAACATTGGAAAAT
ATGTTCCTCAATGACCATCAGAATTTTATCAATTCACGACGCTTCGATATTATCATGCAG
CCAATCGTTGATCAAATCGAAAATGAAGATGCATTGAAATGCGAAAAAATTCAGGAGCTG
ATAAGAAAGTGTATAGCTCAATTAGCTGTCGCAATATCTGATGATATTTTATGGAAGCAA
TTAAATTATCAAGTTTTGCTAAAAACACGCTCAGACAATCCTGAGATAAGAATTTTTGGT
GTCAAAGTGTGTGTTGACATCGCAAGGAAATTAACTGAAGATTTTGAGTCATTAATTCCA
GAGACAATACCATTTTTATCGGAGTTGCTTGAAGACGATGATCATAAAGTTGTGGAGGCA
TGTCAAAATTCTGTTCGCGAGTTGGAGACGATTTGTAATTCATTGTTTAATATTCATCAG
TATAAGATTACAATTAAAATGAATATTTGCGATTTGCCTGATCATATTTTAGAGAAAATC
TTTTTGGAAATCGATTATGACGAAATTTTCGATTTAACTTCTGTTTGCTCACGTTTTAAT
GAAGTTATAAGTTCGAGTTATCAATTAATGAGCTCATTCACTGTTCAATGGAAAAAAAGC
ATGTCGAAACAAGTGGATTTAAGGCCACTTCTTTCTTCGGAACGAAAATATCAGAGAATT
CAAATTGAAGACATTGTTGGTATTAAGCCAAACTTGGACAAGTTCATAACAAAACACGCA
AATACTCTTTCTGAAGTTAACTTATTCGAATGCTCCTTCAAATCATCAGAAATATCCGCA
GCACTGGAAGTATTGAAAGATAATTTACATTTAATAGGAATGTGCGAGGTCAATTTCGAG
GTTGATTCAAAAATTGTGCCCATCCAATTTAAAAAACTTAATTATATGGAAATAATGTAC
GGATATGGTGATGGATATTGCTCGATTTTTAACATGTTTACTGGATGTAAAACCGTTAAG
AATTTGACATATGAGGATAATTTCGAAGTCACTATTGCAGAAGCACAAGAATTCAGTCAT
TTTCTTTCATCCTTGAGCGGTTTAGAATATCTCTCACTTTCTTACAATGTGGCTCAAAAG
ATTTTTCTTGATGAAGATTTCAATCAAGCAGTCCAATTTCATCTCAAAAAACTCTTTGTC
AGTATGAATCCACCAGCTCATCGTCCATCAACTAAAGCCAAACGCATCGCATATGAACAT
TTACTCAATTTCCTTAATAAGCAAAGCTCTTCATTGAAGGATCTTAGTGTAACACATTCT
AAATTAACAACAGATCGATTGGAGTTTTTACTGAGCTTGAATGTAGAAAAACTAGGACTA
GTTGCATGCGATTTCGTTCATCGTCGTAAAATATTTGTCAAAAACTCAACTATTAAAACA
TTATTCATATCTTTAAATGATGATGAAATTGAAGAAAATAGCGAGGAAGAAAGTGCCGTA
TGTGAACTTATTAAAATGTGCGAAAATGTTAAGCATGTTCATTTTACATGTGCTGAATTA
AACTTTGAAATTGGATTGGCTATTCGTAATAGTAAAAGTAAAATTGAGAAACTGACAATG
TATCGATGCAGTTTCTTTCCAATGAACATTCCAACACTCAAATATCTCGATGTTGGTGGT
TTAATTGATCATGAAGAAATTATCAGTTTGATTCGTCTTAATCCACAATTAGAAGAGCTT
CATGGACCTGGATGCTTACGTCATTTTCAAAAATTTGCACAAGCAATTGATGAGTTGAGC
AGTCTTAAGAAACTTATACTTATGTAA

>g7341.t1 Gene=g7341 Length=2468
MSTSLREQLLRLQTPQASQFVDKKKRDSILFSSKDAATKSRETIYEIGISGLRELIEIDD
SLTEFENTLFNFTAKDVQRAVETKEVNKLLDKNIRRFMYHLSPYFMIPSSHKCLEWLIRR
FNINLYNREEMLMLILPYHQTNMFVRCVQTMKFTDSNDKWNFFNEVKKSSSPLSKITLWN
HGVSQPSFLDFVGKFTYNAVKELGHNAGKLQTMISFYFTTIAGTLEQATKINDNHILGAA
RYLNHTYNSSIIDYTSAGYMITAQLVAKARLSTEILYMIMNKMTETIPLKLSRECLLLLA
LIFQTQSETLVISDKTLENLLAFDRFLFALKEIMREDKIKTEFYRALIYKLLVKLQDKNV
DFNKYCDICEKILYEVDMDDELARVIIRTVLDSYIQEDSEPQPIQEKSSQDESEIILLDS
DDEENIPLKSQNVTKWYSMLLKKLERQYPLAFDLVVKDIMTRNPQRKRNGLKNVLGFLMN
VSCSNNDTDIFENLYHHNFQVRSKAVSYLVKNFHKIELTPENEQILKLTLTERLNDESVE
VVAEILKMNLNFLIKIIGVDELIAKLTKIIMKYWRNSEKWEKNASSALKFLITLCENNDS
NIALFSILPFMFECNTNAKPFAFENNSKIVSNINEMLEDHAKVPSSESLLSTIQNVLINN
HHLGSFSENFAFYLLSNSFTATTKDPEFSIEAFQIIQTITSSANVKFNQMDISDVNIMKR
NEISIKILSQVLIALIDATKFTIQDINFSNQNTEMKLIFKIFKFTIDLFFKVDPSYRENV
NTLMIGLLEKVCASDETKKLNFFSQFCVMHAAICNNNMLEFQARTMGLLNHVLKSGQMKE
KDYSNEMYQNILISLSSPITKIREFGMELISTLVDKNISGKWKFLLDKLSERKDEILMDC
EQIPMIIYLLTNKKSSKNMQEIIESILVRIADDKTFDYIQSELLKILKYFNDQKVLDISI
QIATKIIDEFNSENFYLNESYATIIKLVLMKFNQETVSNLWNLALKSLKCHYIMNDDGKI
ITPSILVLQSIDNELFYKLHPNHKMQIFEAIIECSMNEQARIVQAAQKVFFEINIDYKLI
QNVLLKFPKCLNISDRMALSYEWKFGITLLELLQNKSEGTDGHHELLPVLFEILSTCLNS
GDQSEIEYLKQIILSLILSICKKISPDGRKQQKFININDSTFKTDLIIKCIKESQNPQTH
HHSLLLLAHLALMIPEQVLRDITTIFTFVGTALVRHDDSYSFQIITKIIENVIPNLLKNN
NDKEVISILRTFATIALDVPVHRRMMLYVKLLDTLGAEKYLWMFIALLLETQVKQPKTKE
EDLPPRLQVALAISKEFDLKTVIVSTTSLVIYLKELPLTIDINKQYIHTTIEDDIFPLET
HTNKNMRHFKYLITLFIKHILESPEISNKTYQMNIEQVHAMKTHFQNLILNTLIWLPDVN
KLIEMKQNEVYWQLILQIYFDILEATIALLAPDMLLIVVERLIEHDNLIVRKKVIELLNR
KLEDDYFKSCANEKILKMMEPLKNVCERIGANDLLSHEESVQQLALVSIKLLSRKLSEDY
PDQFIECLNHLTAVINCKTLRKTTTINLIDCVAELLSDLKVYGISLLGKFLPNLINLLVL
PESPSYNLLYSVTSSLLKIVEAVPLFMSPYLVQIISQLIKIAPQLKTIQDTKISYIVQKI
KKIWESMSQMIPLRVLYPSIDEIYDSINQKQQFNSVAPLMEFMHEIFKHVETKDIRDFQA
ELTEFFLKIIRFRCEATKTNNMQFNEINDIEGSIMRALISLILKLSEGSFRPLFENITNW
AIKDKEDDDNRLITFFRITTEVSAALKSLFLLFASDVVDSASQLLDKCNSSKENEEGLCF
GNDTEKNLYLIENILQTLENMFLNDHQNFINSRRFDIIMQPIVDQIENEDALKCEKIQEL
IRKCIAQLAVAISDDILWKQLNYQVLLKTRSDNPEIRIFGVKVCVDIARKLTEDFESLIP
ETIPFLSELLEDDDHKVVEACQNSVRELETICNSLFNIHQYKITIKMNICDLPDHILEKI
FLEIDYDEIFDLTSVCSRFNEVISSSYQLMSSFTVQWKKSMSKQVDLRPLLSSERKYQRI
QIEDIVGIKPNLDKFITKHANTLSEVNLFECSFKSSEISAALEVLKDNLHLIGMCEVNFE
VDSKIVPIQFKKLNYMEIMYGYGDGYCSIFNMFTGCKTVKNLTYEDNFEVTIAEAQEFSH
FLSSLSGLEYLSLSYNVAQKIFLDEDFNQAVQFHLKKLFVSMNPPAHRPSTKAKRIAYEH
LLNFLNKQSSSLKDLSVTHSKLTTDRLEFLLSLNVEKLGLVACDFVHRRKIFVKNSTIKT
LFISLNDDEIEENSEEESAVCELIKMCENVKHVHFTCAELNFEIGLAIRNSKSKIEKLTM
YRCSFFPMNIPTLKYLDVGGLIDHEEIISLIRLNPQLEELHGPGCLRHFQKFAQAIDELS
SLKKLILM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g7341.t1 PANTHER PTHR13457:SF1 HEAT REPEAT-CONTAINING PROTEIN 1 1 2012 0.0000000
4 g7341.t1 PANTHER PTHR13457 BAP28 1 2012 0.0000000
1 g7341.t1 Pfam PF12397 U3 small nucleolar RNA-associated protein 10 248 350 0.0000000
2 g7341.t1 Pfam PF08146 BP28CT (NUC211) domain 1736 1889 0.0000000
10 g7341.t1 ProSiteProfiles PS50181 F-box domain profile. 2026 2080 13.3130000
9 g7341.t1 SMART SM01036 BP28CT_2 1732 1889 0.0000000
6 g7341.t1 SUPERFAMILY SSF48371 ARM repeat 285 1069 0.0000068
5 g7341.t1 SUPERFAMILY SSF48371 ARM repeat 1105 2001 0.0000000
8 g7341.t1 SUPERFAMILY SSF81383 F-box domain 2029 2074 0.0000050
7 g7341.t1 SUPERFAMILY SSF52047 RNI-like 2116 2467 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values