General information for g7341.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7341 is located on chr_2: 23125974..23126775 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7341 | g7341.t3 | TSS | g7341.t3 | 23125213 | 23125213 |
| chr_2 | g7341 | g7341.t3 | isoform | g7341.t3 | 23125902 | 23126775 |
| chr_2 | g7341 | g7341.t3 | exon | g7341.t3.exon1 | 23125902 | 23125904 |
| chr_2 | g7341 | g7341.t3 | exon | g7341.t3.exon2 | 23125969 | 23126775 |
| chr_2 | g7341 | g7341.t3 | cds | g7341.t3.CDS1 | 23126152 | 23126775 |
| chr_2 | g7341 | g7341.t3 | TTS | g7341.t3 | 23126818 | 23126818 |
Sequences
>g7341.t3 Gene=g7341 Length=810
AAGAATTTGACATATGAGGATAATTTCGAAGTCACTATTGCAGAAGCACAAGAATTCAGT
CATTTTCTTTCATCCTTGAGCGGTTTAGAATATCTCTCACTTTCTTACAATGTGGCTCAA
AAGATTTTTCTTGATGAAGATTTCAATCAAGCAGTCCAATTTCATCTCAAAAAACTCTTT
GTCAGTATGAATCCACCAGCTCATCGTCCATCAACTAAAGCCAAACGCATCGCATATGAA
CATTTACTCAATTTCCTTAATAAGCAAAGCTCTTCATTGAAGGATCTTAGTGTAACACAT
TCTAAATTAACAACAGATCGATTGGAGTTTTTACTGAGCTTGAATGTAGAAAAACTAGGA
CTAGTTGCATGCGATTTCGTTCATCGTCGTAAAATATTTGTCAAAAACTCAACTATTAAA
ACATTATTCATATCTTTAAATGATGATGAAATTGAAGAAAATAGCGAGGAAGAAAGTGCC
GTATGTGAACTTATTAAAATGTGCGAAAATGTTAAGCATGTTCATTTTACATGTGCTGAA
TTAAACTTTGAAATTGGATTGGCTATTCGTAATAGTAAAAGTAAAATTGAGAAACTGACA
ATGTATCGATGCAGTTTCTTTCCAATGAACATTCCAACACTCAAATATCTCGATGTTGGT
GGTTTAATTGATCATGAAGAAATTATCAGTTTGATTCGTCTTAATCCACAATTAGAAGAG
CTTCATGGACCTGGATGCTTACGTCATTTTCAAAAATTTGCACAAGCAATTGATGAGTTG
AGCAGTCTTAAGAAACTTATACTTATGTAA
>g7341.t3 Gene=g7341 Length=207
MNPPAHRPSTKAKRIAYEHLLNFLNKQSSSLKDLSVTHSKLTTDRLEFLLSLNVEKLGLV
ACDFVHRRKIFVKNSTIKTLFISLNDDEIEENSEEESAVCELIKMCENVKHVHFTCAELN
FEIGLAIRNSKSKIEKLTMYRCSFFPMNIPTLKYLDVGGLIDHEEIISLIRLNPQLEELH
GPGCLRHFQKFAQAIDELSSLKKLILM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g7341.t3 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 9 | 207 | 0 |
| 1 | g7341.t3 | SUPERFAMILY | SSF52047 | RNI-like | 21 | 206 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed