General information for g7355.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7355 is located on chr_2: 23360061..23361625 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7355 | g7355.t2 | isoform | g7355.t2 | 23360061 | 23361625 |
| chr_2 | g7355 | g7355.t2 | exon | g7355.t2.exon1 | 23360061 | 23360746 |
| chr_2 | g7355 | g7355.t2 | cds | g7355.t2.CDS1 | 23360063 | 23360731 |
| chr_2 | g7355 | g7355.t2 | exon | g7355.t2.exon2 | 23361031 | 23361625 |
| chr_2 | g7355 | g7355.t2 | TTS | g7355.t2 | 23361171 | 23361171 |
| chr_2 | g7355 | g7355.t2 | TSS | g7355.t2 | 23361539 | 23361539 |
Sequences
>g7355.t2 Gene=g7355 Length=1281
ATGTATAAAAAAAGTTTTCGGAGTAAGTAACTGACCCCTCAATACAAAAAATGACGCTTT
TCAATATGCAGATGGAGAACTCCAGCATTACATCTCTTTTAGAACTTTCAGCAGAAAAGG
TGTCTGTAATAAAAATTAAAATTTAAATTCTTATTTAAGTAAAACATAAGTTTAACTAAT
TTAGACTTAAAATATAGTGCATAAAGAATACGAAAAAGTTGATATGTCAATAGAAATTTA
TGATTAAAGTGGATAAAATAAGTGAAAATATAACAATGTGAAACAACCAACATTAATTAA
AAATAAAGTAACAAATACATGCAAGAAGTGAGAAAGAGAGAGAGCGTGGTAGTGTTTGTG
TTGTTTAAAAAGATATGAGTAATTGAAACTCTTTTTTTACATTAAAATTACACTAATTAA
AAACAAGAGAGTTTTCATTCACAATAACGCTAAAAGAAAAAAGAAAAAAATTTAGTGCGT
AACTATTTGTTGTGTGCATAGCAAGGGCTAGTGAAAAAATTTTTTTTTTACAATTCTGGA
TCAATTTCTTGTAACGTTGAAAAATCAACAAATTCCTTCAGAGACAAAAATTAATGGAAT
AGAAAATGGGATGATTGGGTTACATTCAGAACTAAACAACAATCCATCGTCAACAAATAA
AAATGCGAGTTCATCGTCATCAACAAGAAAGCAGGCATTAAATGCTGTTGAATATTACAA
TCAAAATGTGCTGCGAGCACGTATGGAAGCAGGCTTGGCTGGCACAAGAAACTTTAGCGG
TGGCAGTGCAATGAAAGGCGAGAGCATGTATCGTAGCAATTCAAGTTTAGAACTGCTCGA
TGTGGGAAAATCAGATAATAGTTTTATGAATCTGAGCGGACCTTTGAGGCGAGAGTATGG
TTCGCACAGTTCAATTGACATTATCTCAGATAAAACCCCAACAACGGCAGCAGCGAAGGG
CGAAAATTTCTTCGCAATGCTTCAAGAATACAGACCTGCAGTGCTTAATATACGAAATAA
TAAAGAAATGCCCAGTAAACGTGATCAAATTGAAATTGTGCACAAGAATCACATGAATGT
TATTGAAAATTCGAGCAATTATGATGATCAAATTGACACAGTTACATCAAGTCCAAAATT
GAGAATGAAATTAAAACTTTGGGGTCAAACGAAAGCGTCAAAATCTCAATCACAAATTAT
TAGCGAAGATGATGTCAATGGAGTCAATTTGAGATGCAATGAAAGCAACTCGAATAGTGC
AAGTAATAGTGCAAATGCATC
>g7355.t2 Gene=g7355 Length=223
MIGLHSELNNNPSSTNKNASSSSSTRKQALNAVEYYNQNVLRARMEAGLAGTRNFSGGSA
MKGESMYRSNSSLELLDVGKSDNSFMNLSGPLRREYGSHSSIDIISDKTPTTAAAKGENF
FAMLQEYRPAVLNIRNNKEMPSKRDQIEIVHKNHMNVIENSSNYDDQIDTVTSSPKLRMK
LKLWGQTKASKSQSQIISEDDVNGVNLRCNESNSNSASNSANA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g7355.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
