General information for g7359.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Mediator of RNA polymerase II transcription subunit 30.
Parent gene
- The parent gene g7359 is located on chr_2: 23371201..23371631 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7359 | g7359.t1 | TTS | g7359.t1 | 23370793 | 23370793 |
| chr_2 | g7359 | g7359.t1 | isoform | g7359.t1 | 23370816 | 23371534 |
| chr_2 | g7359 | g7359.t1 | exon | g7359.t1.exon1 | 23370816 | 23371231 |
| chr_2 | g7359 | g7359.t1 | cds | g7359.t1.CDS1 | 23370816 | 23371231 |
| chr_2 | g7359 | g7359.t1 | exon | g7359.t1.exon2 | 23371295 | 23371456 |
| chr_2 | g7359 | g7359.t1 | cds | g7359.t1.CDS2 | 23371295 | 23371456 |
| chr_2 | g7359 | g7359.t1 | exon | g7359.t1.exon3 | 23371531 | 23371534 |
| chr_2 | g7359 | g7359.t1 | cds | g7359.t1.CDS3 | 23371531 | 23371534 |
| chr_2 | g7359 | g7359.t1 | TSS | g7359.t1 | 23371632 | 23371632 |
Sequences
>g7359.t1 Gene=g7359 Length=582
ATGGATTTTCAAAATCAAATTGCACCAAGTAATCAACAACAACAAAATCAAAGTCAAATT
CCTCAATTATCACTACAAACACCTCAAACGCCTAATCAAACTATAGCAGGAGCAAATATT
AATCCACAACAGAAAGAATTAAATGTTTTAACTTTATGTAGAATAGGTCAAGAAACAGTG
CAAGATATTCTCTCACGATTTCAAGATGTTTTTAGCATTCTTAAAAATCATCAGCCACCA
AATGGAACTCAAGGGTCAGGAATAATAAGTGCAGACAAACGACAAAAAATGCAAGATCAA
TTTAGAACAATACGATTATTGTTTAAGAGACTTCGATTGCTCTATGAAAAGTGTGAAAAC
TCAGAAGAATATATCGAAATTGAAAATTTAATCCCATATGTTGATAACCCAAACACACTT
GATCCAATGTCCAATGCTGATGAATATGAGAAAGCATTGGCAGAAAATCGTGAACTCAAT
GAAGTATTGAAAGAGAAAAATCTTCAACTTAAAGAGATTATAGATCGCATAAGAATTATT
GTTAGTGAAATCAATACAATGATGTCGGCAAGAAGATGTTAA
>g7359.t1 Gene=g7359 Length=193
MDFQNQIAPSNQQQQNQSQIPQLSLQTPQTPNQTIAGANINPQQKELNVLTLCRIGQETV
QDILSRFQDVFSILKNHQPPNGTQGSGIISADKRQKMQDQFRTIRLLFKRLRLLYEKCEN
SEEYIEIENLIPYVDNPNTLDPMSNADEYEKALAENRELNEVLKEKNLQLKEIIDRIRII
VSEINTMMSARRC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7359.t1 | Coils | Coil | Coil | 146 | 176 | - |
| 4 | g7359.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - |
| 2 | g7359.t1 | PANTHER | PTHR31705:SF4 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30 | 13 | 192 | 2.2E-53 |
| 3 | g7359.t1 | PANTHER | PTHR31705 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30 | 13 | 192 | 2.2E-53 |
| 1 | g7359.t1 | Pfam | PF11315 | Mediator complex subunit 30 | 48 | 189 | 6.2E-49 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K15143 (mediator of RNA polymerase II transcription subunit 30)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
