General information for g7361.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Casein kinase I isoform delta-A.
Parent gene
- The parent gene g7361 is located on chr_2: 23387419..23389179 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7361 | g7361.t3 | TTS | g7361.t3 | 23387398 | 23387398 |
| chr_2 | g7361 | g7361.t3 | isoform | g7361.t3 | 23387419 | 23388448 |
| chr_2 | g7361 | g7361.t3 | exon | g7361.t3.exon1 | 23387419 | 23388308 |
| chr_2 | g7361 | g7361.t3 | cds | g7361.t3.CDS1 | 23387419 | 23388294 |
| chr_2 | g7361 | g7361.t3 | exon | g7361.t3.exon2 | 23388440 | 23388448 |
| chr_2 | g7361 | g7361.t3 | TSS | g7361.t3 | 23389091 | 23389091 |
Sequences
>g7361.t3 Gene=g7361 Length=899
GCTCAGAAGGAGACTACAATGTTATGGTAATGGAATTGTTGGGTCCATCTCTAGAAGATC
TTTTCAATTTTTGCTCACGACGCTTCTCATTAAAAACTGTTTTGCTGCTAGCTGATCAGA
TGATTTCACGCATTGACTATATTCATTCTCGAAATTTCATTCATCGTGATATTAAACCAG
ATAATTTCTTAATGGGTTTAGGAAAGAAAGGGAATTTGGTGTATATAATCGATTTTGGTT
TAGCTAAAAAGTACAAGGATGCTAAATCATCGATGCACATACCATACAGAGAAAACAAAA
ATTTGACAGGAACCGCACGATATGCTTCAATCAATACACATTTAGGCATTGAACAATCGA
GACGAGATGATTTGGAGTCCTTGGGATATGTGCTTATGTACTTTAATCTGGGCACCTTGC
CTTGGCAAGGTCTTAAAGCAGCCAATAAACGACAAAAATATGAGAGAATATCTGAGAAGA
AGCTCTCTACACCAATTGAAGTTCTGTGCAAGGATTTCCCAGTCGAATTTCCAACGTATC
TAACATATTGTCGACGTCTCGATTTCATTCAACGTCCTGATTACTCTTATCTTCGAAAAC
TCTTTCGCACTCTCTTTCACAGTCAAGGCTTTACATATGATTATGTATTTGATTGGAATA
TGCTGAAATTTGGTGGACCACGCAGCAGCAGTAATCAGCAACAAGAACAACAACAGCAGC
AGCAAGAAGGAGGCGTCGAAGGCACAAACAGACGAAACAATTTGCCAATGCTACAACCGC
ACCCGAATGCTAATGACGAACCAATTGCATCAAATTCCCGAAACCAATATGAAAATGAAC
GACGAGCATCAGTGAGGATTAGAGGACAAACTTTAGACACTCGGAATTTAAGTAAATAA
>g7361.t3 Gene=g7361 Length=291
MVMELLGPSLEDLFNFCSRRFSLKTVLLLADQMISRIDYIHSRNFIHRDIKPDNFLMGLG
KKGNLVYIIDFGLAKKYKDAKSSMHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESL
GYVLMYFNLGTLPWQGLKAANKRQKYERISEKKLSTPIEVLCKDFPVEFPTYLTYCRRLD
FIQRPDYSYLRKLFRTLFHSQGFTYDYVFDWNMLKFGGPRSSSNQQQEQQQQQQEGGVEG
TNRRNNLPMLQPHPNANDEPIASNSRNQYENERRASVRIRGQTLDTRNLSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7361.t3 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 257 | 2.1E-93 |
| 8 | g7361.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 239 | - |
| 9 | g7361.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 291 | - |
| 10 | g7361.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 270 | - |
| 2 | g7361.t3 | PANTHER | PTHR11909 | CASEIN KINASE-RELATED | 1 | 228 | 8.4E-124 |
| 3 | g7361.t3 | PANTHER | PTHR11909:SF378 | CASEIN KINASE I ISOFORM DELTA | 1 | 228 | 8.4E-124 |
| 1 | g7361.t3 | Pfam | PF00069 | Protein kinase domain | 1 | 145 | 1.1E-18 |
| 6 | g7361.t3 | ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 45 | 57 | - |
| 11 | g7361.t3 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 198 | 23.962 |
| 7 | g7361.t3 | SMART | SM00220 | serkin_6 | 1 | 198 | 4.7E-5 |
| 4 | g7361.t3 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 211 | 8.09E-66 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
