General information for g7361.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Casein kinase I isoform delta.
Parent gene
- The parent gene g7361 is located on chr_2: 23387419..23389179 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7361 | g7361.t4 | TTS | g7361.t4 | 23387398 | 23387398 |
| chr_2 | g7361 | g7361.t4 | isoform | g7361.t4 | 23387419 | 23388672 |
| chr_2 | g7361 | g7361.t4 | exon | g7361.t4.exon1 | 23387419 | 23387769 |
| chr_2 | g7361 | g7361.t4 | cds | g7361.t4.CDS1 | 23387419 | 23387769 |
| chr_2 | g7361 | g7361.t4 | exon | g7361.t4.exon2 | 23388100 | 23388308 |
| chr_2 | g7361 | g7361.t4 | cds | g7361.t4.CDS2 | 23388100 | 23388308 |
| chr_2 | g7361 | g7361.t4 | exon | g7361.t4.exon3 | 23388440 | 23388672 |
| chr_2 | g7361 | g7361.t4 | cds | g7361.t4.CDS3 | 23388440 | 23388662 |
| chr_2 | g7361 | g7361.t4 | TSS | g7361.t4 | 23389091 | 23389091 |
Sequences
>g7361.t4 Gene=g7361 Length=793
TGCTTTCAAAATGGAGTTGCGTGTTGGTAATAGATATAGATTGGGCAGAAAAATTGGCTC
AGGTTCATTTGGTGATATTTATCTGGGAACTAATATATCGACAAGTGAGGAAGTAGCAAT
CAAATTAGAATGTATCAAAACAAAGCATCCGCAGCTGCATATTGAGAGTAAATTTTACAA
AATGACACAAGGTGGAATAGGAATACCAACCATAAAGTGGTGTGGCTCAGAAGGAGACTA
CAATGTTATGGTAATGGAATTGTTGGGTCCATCTCTAGAAGATCTTTTCAATTTTTGCTC
ACGACGCTTCTCATTAAAAACTGTTTTGCTGCTAGCTGATCAGATGATTTCACGCATTGA
CTATATTCATTCTCGAAATTTCATTCATCGTGATATTAAACCAGATAATTTCTTAATGGG
TTTAGGAAAGAAAGGGAATTTGTGTCGACGTCTCGATTTCATTCAACGTCCTGATTACTC
TTATCTTCGAAAACTCTTTCGCACTCTCTTTCACAGTCAAGGCTTTACATATGATTATGT
ATTTGATTGGAATATGCTGAAATTTGGTGGACCACGCAGCAGCAGTAATCAGCAACAAGA
ACAACAACAGCAGCAGCAAGAAGGAGGCGTCGAAGGCACAAACAGACGAAACAATTTGCC
AATGCTACAACCGCACCCGAATGCTAATGACGAACCAATTGCATCAAATTCCCGAAACCA
ATATGAAAATGAACGACGAGCATCAGTGAGGATTAGAGGACAAACTTTAGACACTCGGAA
TTTAAGTAAATAA
>g7361.t4 Gene=g7361 Length=260
MELRVGNRYRLGRKIGSGSFGDIYLGTNISTSEEVAIKLECIKTKHPQLHIESKFYKMTQ
GGIGIPTIKWCGSEGDYNVMVMELLGPSLEDLFNFCSRRFSLKTVLLLADQMISRIDYIH
SRNFIHRDIKPDNFLMGLGKKGNLCRRLDFIQRPDYSYLRKLFRTLFHSQGFTYDYVFDW
NMLKFGGPRSSSNQQQEQQQQQQEGGVEGTNRRNNLPMLQPHPNANDEPIASNSRNQYEN
ERRASVRIRGQTLDTRNLSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g7361.t4 | Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 85 | 3.4E-39 |
| 9 | g7361.t4 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 86 | 146 | 1.3E-16 |
| 8 | g7361.t4 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 147 | 227 | 6.7E-10 |
| 14 | g7361.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 208 | - |
| 13 | g7361.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 260 | - |
| 15 | g7361.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 239 | - |
| 2 | g7361.t4 | PANTHER | PTHR11909 | CASEIN KINASE-RELATED | 1 | 142 | 1.4E-93 |
| 4 | g7361.t4 | PANTHER | PTHR11909:SF378 | CASEIN KINASE I ISOFORM DELTA | 1 | 142 | 1.4E-93 |
| 3 | g7361.t4 | PANTHER | PTHR11909 | CASEIN KINASE-RELATED | 143 | 197 | 1.4E-93 |
| 5 | g7361.t4 | PANTHER | PTHR11909:SF378 | CASEIN KINASE I ISOFORM DELTA | 143 | 197 | 1.4E-93 |
| 1 | g7361.t4 | Pfam | PF00069 | Protein kinase domain | 9 | 137 | 9.3E-18 |
| 11 | g7361.t4 | ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 15 | 38 | - |
| 10 | g7361.t4 | ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 124 | 136 | - |
| 16 | g7361.t4 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 9 | 260 | 19.312 |
| 12 | g7361.t4 | SMART | SM00220 | serkin_6 | 9 | 230 | 7.4E-8 |
| 6 | g7361.t4 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 5 | 180 | 1.5E-46 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
