General information for g7362.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein mahjong.
Parent gene
- The parent gene g7362 is located on chr_2: 23393336..23394080 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7362 | g7362.t1 | TTS | g7362.t1 | 23389331 | 23389331 |
| chr_2 | g7362 | g7362.t1 | isoform | g7362.t1 | 23389487 | 23394080 |
| chr_2 | g7362 | g7362.t1 | exon | g7362.t1.exon1 | 23389487 | 23389752 |
| chr_2 | g7362 | g7362.t1 | cds | g7362.t1.CDS1 | 23389487 | 23389752 |
| chr_2 | g7362 | g7362.t1 | exon | g7362.t1.exon2 | 23389809 | 23389913 |
| chr_2 | g7362 | g7362.t1 | cds | g7362.t1.CDS2 | 23389809 | 23389913 |
| chr_2 | g7362 | g7362.t1 | exon | g7362.t1.exon3 | 23389973 | 23392114 |
| chr_2 | g7362 | g7362.t1 | cds | g7362.t1.CDS3 | 23389973 | 23392114 |
| chr_2 | g7362 | g7362.t1 | exon | g7362.t1.exon4 | 23392168 | 23393648 |
| chr_2 | g7362 | g7362.t1 | cds | g7362.t1.CDS4 | 23392168 | 23393648 |
| chr_2 | g7362 | g7362.t1 | exon | g7362.t1.exon5 | 23393714 | 23393863 |
| chr_2 | g7362 | g7362.t1 | cds | g7362.t1.CDS5 | 23393714 | 23393863 |
| chr_2 | g7362 | g7362.t1 | exon | g7362.t1.exon6 | 23393962 | 23394080 |
| chr_2 | g7362 | g7362.t1 | cds | g7362.t1.CDS6 | 23393962 | 23394080 |
| chr_2 | g7362 | g7362.t1 | TSS | g7362.t1 | 23394294 | 23394294 |
Sequences
>g7362.t1 Gene=g7362 Length=4263
ATGAACCAACAACAGCAAGAGGCTGATCTTGCAGAGATTAATGATTTACATGAAATATTT
CGAATATGGGAGCAAAAATATACTTCTACAAATTTTGATCCTGAACCATTCGTAAGACGT
GTCGCTGAAAGATTTGAAGAAGAAACAGCTCAATATATGCAAAAAGATCCTGACCCATTT
GATGAAAGACATCCATCTAGAACCGATCCAGCATCAGAATTAGGAAAGAATTTAAAATTG
CTTTTTAAAAAGGAAACGTTTATGAATAGGCTAGTTAATGATTATCTTCGCGATAATTTC
TTCACAAGACAAAATATTAATAAAAGTTCCTTACAATTAAATGTGTCTGCATGTCGACTT
ATATTAATAATTATGCCGGGTCTTGAAACATCAGCTGTTTTTCAAGTATCAAATGAACAA
TTAATAAATCGTTTGTACGAATGGGCTGAAAATGGTGTTGAACCATTGAGAAGTTATGCA
ATTGGATTACTTGGAGCAGCTATGGATATACAGGATATTGCCGTTGCATTTCGAGATCAA
AACATTCGTATGCTTCCTATATTACTTCGACGGTTAAGAATGATTCAGAAAAAATGTGCC
CAATCTGGTGATATTTCTGCATTACTAATAAATGAAAATGATTCAGAGACACCTGTTGAT
ATAATTGTCAATTCAACATCAAATGCTCTTTCCATGAATATCAATGACTCTCAAAGTGAT
GAAAATTCCCGTTCTAATGCTCAAGACAATCCTGTCAATCGTCATATGATTATGCTTCAT
CCACCAACACTCGCCACAAGCCAAATGTTAATTTTAAGATATTTAACACCAATGGGAGAA
TATCAAGAATTTCTTCCTTTCATATTCGAGAACGATGCTTTAGATATCATTTTCAATTTT
ATTGATAATCCCAAAGATTTGTGCCTAACATTCGAGGCACTTAAATATCTTGCCTCTTTG
CTATGTCATAAAAAGTGCTGCATAGAATTTCTAAATAGGAATGGAATTCAAAGATTATTG
AAATTGCCTAGACAATCAACAACAGCAACTGGAATTGCTATTGCTCTATATTATATAGCA
TATTGTGAAGAGGCAATGGAGAGAATATGTTCAATGACACCACGTTTGATTTCTGAACTT
GTAACTTATGCACTCGGTTTGCTTGGTTGTAATCACGATTCAGGAAGATGTCATGCTACA
ATGTTTTTTGGTCTTTCTTTTCAATTTAAGCATATGCTTGAAGAATTTGACAATCAAGAT
GGATTACGTCAATTATATAATGTAATTTCAGTTCTTCCTATTCTAAGTCAAAACGAAGAA
GCAAACCTTTCGGCTGATGAGGAAAATGCAGAAAGACAAGTAATTCGACATGTTTGTGTT
GCCATTAAGAAATATTTTGAGAGTCACTTGTTCTTCAAGTATACGCAAGTAATGAGAACA
TCATCGACTCGAATTCCAATTCCAATGAGAGCACTAAAAAATCCCACAGAAGTTATCGAT
GATCAAATTATGTCATTACAAAATATACTTCCAATGAAATCTAATTGGCAGCCAGTTAAC
ACTTTTATTCAACTAGGAGGTATTTCTCTTTTTATTCTTATAATTGGTCATAGCTATGAG
TGGAATTATAGTGGACGAGGAGAAACTGTTCGATCTGCATTAGACGTTCTAAATATATGC
TGTGTAGTGCCACGTGTTCATGCAATCCTATGTGAGAGAATTGATTTTCCTGATGAAGCT
AGTGCTTCAGGATTCAATATTGTGCTGGGATGTTTAGAAGGTGAAATAGTAGCTGATCCA
GAAGTTCAAAAATCAGCTTTATCAATGTTAGTAAATTGTGTTTGTGCTCCAATTCATCGT
CCTAGTGGGAATGTAGCGAAATATGGAAGTTGTAAGAAGAAAGTTATTGATAAAAATAGT
GAAGAATTGATAAAAATGGTTTGGGAAACTGTGAGAAGTAATAATGGAATAATTGTGCTT
TTGCAATTGATGACAGTGAAAACTCCAATAACTGATGCAGACTATATACGTGGTATGGCT
TGTCGAGCACTCGCTGGTTTAGCTCGATCAGAAACTGTTCGTCAAATTATCAGCAAACTT
CCACTATTTGTAAATGGTGAACTTCAACAATTATGTAGAGATCCAATTTTACAAGAAAAA
CGAGCAGAGCATGTGCAGTTTCAGAAGTATGCTCTTGAGCTTCTCGAAAGAGTCAGTGGC
AAACCAATAAATATTGATACTTCATTAGCAAATATCCATAAAGCAAATGTTGTGGCTCAA
ACTAAAATTCAATTCAATGAACAGCAACTCAATTATTTAATTTATCAACATCTTCAAGAT
AATGGTTTAACGTCAACAGCTGAAAGTCTTTTAAAAGAAGCAAAACTTGATCAAGTTATT
ACACAATCGAAACCATCTCTTTTGAATCAAAGTTTCAATTCACCTTCTATATTTCGTTCA
CCAATGATTCAACGCTCTAGAATAAATCGAAAAGCCGTTGATCACTCAAATCTCAATCAA
AGTTTTAACGAGATAAATTTAGTTGATACATCAAAGTTGAATAATAAATCAAATTGTATT
GATTCATCAACACCATCGACTACACCAATAAAACTAATCAAAAAAGCGCCAACAACACCT
GCACCAACTACATCAAATCAATCAACATTAGAGAAGCAAACAATTTCTGAGAGTTTTTTA
ACCACAAATGTTCCATTATCTTTAACTAATCAACAACAAAAAGTTCCAAATTTGCCAAAT
GTAAATGTTACATTGAATACAATCATCACAGAATATCTCACAAACCAGCATTCTTTGTGC
AAAAATCCTATGTCAACTTGTCCGACATTTGATTTATTTGAACCACACAAATGTCCTGAT
CCTCGGCCAAAATCAATTGCTGGAATGTGCGTCAATGTAGCGGCAAGATTCTTTAAACGC
CATCAAGGATTTAATTCTACAAAATTGGATCGCCGATTTGTTCATACTAATTTTAATGTA
GCAAGAACATTAAGAGTACCAGATGTTGATTTATATTTTACCTGTTGTGACTTTTTCACT
CCTGAGGGAAACAAGATTGTCGTGGGTACACACAATGGAGAACTTCGAGTTCTTAATGTA
AATGATTCAAATGAAGAATTTAGTGCATCAGTATCTGATTCATACATTAATAATATCAAG
TGTTCGCGTGATTCTCAATTTGTCCTCACTAGTGCATGGCAGACACCAATGTCTGTTCTG
TGGTCAGTAGAAAATAAACAATTTATCTCAAAATTGCAGTTTAATGATGAAGAGTATGTC
GAATTTAGTAATATCAAGCAAGACAAAGTTTTAGGAACGAAAGCTGAAACAGCCACAATT
TATGACATTAATACTGGTCAAGTTATTCGTACTTTCAAACCTGTCACATTCAATCAATAC
AACAAAAATCGTGCAACCTTTTGTCCAACTGATGAATTGGTCTTATCAGACGGTGTACTT
TGGGATGTCAGAACAGGAGAAAATATTCATAAATTTGATAAACTTAACAACACACTGTCT
GGAGTATTTCATTCAAATGGTTTAGAAGTTATTTCAAATACAGAAGTTTGGGATTTGAGA
ACATTTCATCTACTTAGAACAATTCCAACACTTGATCAATGTTATCTCAAATTTTCTTCT
CAAAATGTCATTTATGCATTTATGGTTCAAAATGAATCGCTCGACGATGATCATGTATAT
GATTCATCATTTAAAGTTATCGATAGCTACGACTATTCAAGTATCTCTACAACAGATGTC
AAAAAATCAATTTATGATTTAACCGTTAATAGTAGTGGATGCCAAATCGCAATCTGTGAG
AATCAAGGCGGATATGAGTCAGTATCTGAATCTGTTATTAGAGTATATACAGTTGGTCGA
AAACGTGATGAATTTGAGGGAGAGATTGAAGAAGAAGAAGAAATGGGTTCTGACGAAGAT
GATGGCTTAGATTCGGGTTCTGATAATGATGATAATGATTTTGATCGAGACAATAATCAG
AGACGTCGAAGAAGAAGATTGAATATAAATCGTGCAAATTTGAATAATATGTTTGATGTA
ATATCATTATCTACTGAAAGTCTTACTGATAGTGAAATGGGAACTGATACTTCAAACAAT
AATTCTGATAATTCAGACGATGATGGAGATGGAGATGGAGAAGAGGCCATAATTGAATTG
AATTCGGATTCTGGTAGTGATACAAACTGGGAAACTGAAGAGGAAATCGAAGATGATGAA
TAA
>g7362.t1 Gene=g7362 Length=1420
MNQQQQEADLAEINDLHEIFRIWEQKYTSTNFDPEPFVRRVAERFEEETAQYMQKDPDPF
DERHPSRTDPASELGKNLKLLFKKETFMNRLVNDYLRDNFFTRQNINKSSLQLNVSACRL
ILIIMPGLETSAVFQVSNEQLINRLYEWAENGVEPLRSYAIGLLGAAMDIQDIAVAFRDQ
NIRMLPILLRRLRMIQKKCAQSGDISALLINENDSETPVDIIVNSTSNALSMNINDSQSD
ENSRSNAQDNPVNRHMIMLHPPTLATSQMLILRYLTPMGEYQEFLPFIFENDALDIIFNF
IDNPKDLCLTFEALKYLASLLCHKKCCIEFLNRNGIQRLLKLPRQSTTATGIAIALYYIA
YCEEAMERICSMTPRLISELVTYALGLLGCNHDSGRCHATMFFGLSFQFKHMLEEFDNQD
GLRQLYNVISVLPILSQNEEANLSADEENAERQVIRHVCVAIKKYFESHLFFKYTQVMRT
SSTRIPIPMRALKNPTEVIDDQIMSLQNILPMKSNWQPVNTFIQLGGISLFILIIGHSYE
WNYSGRGETVRSALDVLNICCVVPRVHAILCERIDFPDEASASGFNIVLGCLEGEIVADP
EVQKSALSMLVNCVCAPIHRPSGNVAKYGSCKKKVIDKNSEELIKMVWETVRSNNGIIVL
LQLMTVKTPITDADYIRGMACRALAGLARSETVRQIISKLPLFVNGELQQLCRDPILQEK
RAEHVQFQKYALELLERVSGKPINIDTSLANIHKANVVAQTKIQFNEQQLNYLIYQHLQD
NGLTSTAESLLKEAKLDQVITQSKPSLLNQSFNSPSIFRSPMIQRSRINRKAVDHSNLNQ
SFNEINLVDTSKLNNKSNCIDSSTPSTTPIKLIKKAPTTPAPTTSNQSTLEKQTISESFL
TTNVPLSLTNQQQKVPNLPNVNVTLNTIITEYLTNQHSLCKNPMSTCPTFDLFEPHKCPD
PRPKSIAGMCVNVAARFFKRHQGFNSTKLDRRFVHTNFNVARTLRVPDVDLYFTCCDFFT
PEGNKIVVGTHNGELRVLNVNDSNEEFSASVSDSYINNIKCSRDSQFVLTSAWQTPMSVL
WSVENKQFISKLQFNDEEYVEFSNIKQDKVLGTKAETATIYDINTGQVIRTFKPVTFNQY
NKNRATFCPTDELVLSDGVLWDVRTGENIHKFDKLNNTLSGVFHSNGLEVISNTEVWDLR
TFHLLRTIPTLDQCYLKFSSQNVIYAFMVQNESLDDDHVYDSSFKVIDSYDYSSISTTDV
KKSIYDLTVNSSGCQIAICENQGGYESVSESVIRVYTVGRKRDEFEGEIEEEEEMGSDED
DGLDSGSDNDDNDFDRDNNQRRRRRRLNINRANLNNMFDVISLSTESLTDSEMGTDTSNN
NSDNSDDDGDGDGEEAIIELNSDSGSDTNWETEEEIEDDE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g7362.t1 | Gene3D | G3DSA:2.130.10.10 | - | 998 | 1312 | 1.5E-101 |
| 10 | g7362.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 70 | - |
| 12 | g7362.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1304 | 1342 | - |
| 9 | g7362.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1307 | 1331 | - |
| 8 | g7362.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1368 | 1420 | - |
| 13 | g7362.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1368 | 1382 | - |
| 11 | g7362.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1383 | 1397 | - |
| 2 | g7362.t1 | PANTHER | PTHR13129:SF4 | DDB1- AND CUL4-ASSOCIATED FACTOR 1 | 3 | 1419 | 0.0 |
| 3 | g7362.t1 | PANTHER | PTHR13129 | VPRBP PROTEIN-RELATED | 3 | 1419 | 0.0 |
| 1 | g7362.t1 | Pfam | PF08513 | LisH | 768 | 794 | 3.6E-7 |
| 15 | g7362.t1 | ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 766 | 798 | 11.114 |
| 7 | g7362.t1 | SMART | SM00667 | Lish | 766 | 798 | 5.1E-7 |
| 5 | g7362.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 108 | 465 | 5.76E-9 |
| 4 | g7362.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 481 | 718 | 4.89E-5 |
| 6 | g7362.t1 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 1013 | 1284 | 1.74E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0016567 | protein ubiquitination | BP |
KEGG
Orthology
- This transcript has been annotated with K11789 (DDB1- and CUL4-associated factor 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
