General information for g7362.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein mahjong.
Parent gene
- The parent gene g7362 is located on chr_2: 23393336..23394080 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7362 | g7362.t2 | isoform | g7362.t2 | 23393336 | 23394080 |
| chr_2 | g7362 | g7362.t2 | exon | g7362.t2.exon1 | 23393336 | 23393648 |
| chr_2 | g7362 | g7362.t2 | cds | g7362.t2.CDS1 | 23393336 | 23393648 |
| chr_2 | g7362 | g7362.t2 | exon | g7362.t2.exon2 | 23393714 | 23393863 |
| chr_2 | g7362 | g7362.t2 | cds | g7362.t2.CDS2 | 23393714 | 23393863 |
| chr_2 | g7362 | g7362.t2 | exon | g7362.t2.exon3 | 23393962 | 23394080 |
| chr_2 | g7362 | g7362.t2 | cds | g7362.t2.CDS3 | 23393962 | 23394080 |
| chr_2 | g7362 | g7362.t2 | TSS | g7362.t2 | 23394294 | 23394294 |
| chr_2 | g7362 | g7362.t2 | TTS | g7362.t2 | NA | NA |
Sequences
>g7362.t2 Gene=g7362 Length=582
ATGAACCAACAACAGCAAGAGGCTGATCTTGCAGAGATTAATGATTTACATGAAATATTT
CGAATATGGGAGCAAAAATATACTTCTACAAATTTTGATCCTGAACCATTCGTAAGACGT
GTCGCTGAAAGATTTGAAGAAGAAACAGCTCAATATATGCAAAAAGATCCTGACCCATTT
GATGAAAGACATCCATCTAGAACCGATCCAGCATCAGAATTAGGAAAGAATTTAAAATTG
CTTTTTAAAAAGGAAACGTTTATGAATAGGCTAGTTAATGATTATCTTCGCGATAATTTC
TTCACAAGACAAAATATTAATAAAAGTTCCTTACAATTAAATGTGTCTGCATGTCGACTT
ATATTAATAATTATGCCGGGTCTTGAAACATCAGCTGTTTTTCAAGTATCAAATGAACAA
TTAATAAATCGTTTGTACGAATGGGCTGAAAATGGTGTTGAACCATTGAGAAGTTATGCA
ATTGGATTACTTGGAGCAGCTATGGATATACAGGATATTGCCGTTGCATTTCGAGATCAA
AACATTCGTATGCTTCCTATATTACTTCGACGGTTAAGAATG
>g7362.t2 Gene=g7362 Length=194
MNQQQQEADLAEINDLHEIFRIWEQKYTSTNFDPEPFVRRVAERFEEETAQYMQKDPDPF
DERHPSRTDPASELGKNLKLLFKKETFMNRLVNDYLRDNFFTRQNINKSSLQLNVSACRL
ILIIMPGLETSAVFQVSNEQLINRLYEWAENGVEPLRSYAIGLLGAAMDIQDIAVAFRDQ
NIRMLPILLRRLRM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g7362.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 70 | - |
| 1 | g7362.t2 | PANTHER | PTHR13129:SF4 | DDB1- AND CUL4-ASSOCIATED FACTOR 1 | 3 | 192 | 4.7E-37 |
| 2 | g7362.t2 | PANTHER | PTHR13129 | VPRBP PROTEIN-RELATED | 3 | 192 | 4.7E-37 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016567 | protein ubiquitination | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed