Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7364 g7364.t6 TSS g7364.t6 23399094 23399094
chr_2 g7364 g7364.t6 isoform g7364.t6 23399150 23400324
chr_2 g7364 g7364.t6 exon g7364.t6.exon1 23399150 23399163
chr_2 g7364 g7364.t6 cds g7364.t6.CDS1 23399150 23399163
chr_2 g7364 g7364.t6 exon g7364.t6.exon2 23399307 23400324
chr_2 g7364 g7364.t6 cds g7364.t6.CDS2 23399307 23399775
chr_2 g7364 g7364.t6 TTS g7364.t6 23400450 23400450

Sequences

>g7364.t6 Gene=g7364 Length=1032
ATGGCTTTATCAAGCTGCACAGTTGCAACGGCCGGTGCCTTAGCTTCACAATCACTCTCA
GGACAAAAAATCAACCCACGAGCAGTTTTTGCATATTCAATTTTTGGACTTTTATTTGGC
GGTTCTGTGCCACATTATTTCTTTAACTTTTTTGAGTCTGTTGTTCCTGATGTCCCTTAT
AAAAAGCTCATTGAGTTTTTACTTGAACGTTCAGTGTTTGCACCTGTTTTTACTGCTATG
AGTCTTTACTTCTTATCAATTTTCGAAGGAAAGAGTCCTGAACAAGCACTCAAGACATTG
CAACAATTATATTTAACGGTATTGACAACAAACTGGAGATACCTATCATTACCCGTCTTT
ATCAATTTCAATTTTGTTCCTCTGTTTCTTCGTGTTTTCGTCGCCAATCTCATTGGCTTT
TTCTGGATTATTTATTTAGCTGATAAGAGACGTAGAGCAGCAGCAAAAAAAGAAAATAAC
TAAATATTATACACAGAGATAATGATTGAGTGAGAAAGATAAAGATTATTAAGGTGGTTT
GTGTGACATTCCTTCTATTACATTATTAACTGCATACAAGTGCGGTGTAATGCTTAATAT
TTCATTATTTTACATTTATCAATGGGTTTTATGGGCTGAAATAATCATCAATTCTGAAAT
GGACTTAATCAATTCTTAGAATTAAAAACATTTTGTAACATTTATTATTATTACTGTAAT
ATCATAATTTTTATTTAATATCATGGAATATGTTATTAATTGCTTTTATTTAGTACAAGA
AAGAATAAAGAATTTGAGTAATTTTTCTAGATAAATAAAATTTAAGTAAAAAGGGACTAG
ACTTTGGAGTTTTCTGTGACTAGAAATGAAAAATATTAACTGAATGTGCTTGCTTATTAG
TTAAGATCAAAATAATTCATATCTGTGAATTATGGACTTATGCTCTGTCTGCTGACACTT
GAACTGCTTCTTGATGAATTAGAGTTTGCCGATGTACGATGGTATGGCAGAGGAATGGGA
CGCTTGCGTGCG

>g7364.t6 Gene=g7364 Length=160
MALSSCTVATAGALASQSLSGQKINPRAVFAYSIFGLLFGGSVPHYFFNFFESVVPDVPY
KKLIEFLLERSVFAPVFTAMSLYFLSIFEGKSPEQALKTLQQLYLTVLTTNWRYLSLPVF
INFNFVPLFLRVFVANLIGFFWIIYLADKRRRAAAKKENN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g7364.t6 PANTHER PTHR11266:SF80 PEROXISOMAL MEMBRANE PROTEIN 2 2 147 8.8E-24
3 g7364.t6 PANTHER PTHR11266 PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 2 147 8.8E-24
1 g7364.t6 Pfam PF04117 Mpv17 / PMP22 family 87 146 1.1E-15
11 g7364.t6 Phobius SIGNAL_PEPTIDE Signal peptide region 1 20 -
12 g7364.t6 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
13 g7364.t6 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 14 -
17 g7364.t6 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 20 -
10 g7364.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 21 29 -
14 g7364.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 30 51 -
8 g7364.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 52 71 -
16 g7364.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 72 88 -
9 g7364.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 89 127 -
15 g7364.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 128 147 -
7 g7364.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 148 160 -
6 g7364.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 28 50 -
5 g7364.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 71 88 -
4 g7364.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 125 147 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values