Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase delta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7370 g7370.t5 TSS g7370.t5 23415793 23415793
chr_2 g7370 g7370.t5 isoform g7370.t5 23415922 23417766
chr_2 g7370 g7370.t5 exon g7370.t5.exon1 23415922 23415929
chr_2 g7370 g7370.t5 exon g7370.t5.exon2 23416358 23416582
chr_2 g7370 g7370.t5 cds g7370.t5.CDS1 23416399 23416582
chr_2 g7370 g7370.t5 exon g7370.t5.exon3 23417036 23417505
chr_2 g7370 g7370.t5 cds g7370.t5.CDS2 23417036 23417505
chr_2 g7370 g7370.t5 exon g7370.t5.exon4 23417566 23417766
chr_2 g7370 g7370.t5 cds g7370.t5.CDS3 23417566 23417766
chr_2 g7370 g7370.t5 TTS g7370.t5 23417944 23417944

Sequences

>g7370.t5 Gene=g7370 Length=904
ATATATAGATTTTCGCGCACAAACATTTTTGTACAAAGAAGTATCTAACATGACTTCGTT
AATAAGTACAATTAAAGCCTCAACAGCTGTTCATTTGTGCTTTGCAATTTCTTATTTCAC
ATCAGGACTCGTAATAAACATTCTTCAATGTTTATTGTTCATCTTTATCAAGCCATTTAA
TAAGAAGCTATTTAGAACTTTAATATACTATTTATGTTATTCATTCCATTGCCTTTGGCT
TTTATTAAATGCAGAAGGCACTCGATTTACGAAATCAAAACATGAAGCTTCCGTAAAGTT
TGCTCAAGAACGAAATATGACTGTTCTTAATCATCATTTAATTCCCCGTACAAAAGGTTT
TACTGCTAGCTTGCCAGTATTGAAAAAGAAGTGTGCTGCTATTATGGATGTACAACTTGC
TTTTCATGAAGATGATGTTGACAAACCGACTGTCATAAATTTGTTAAGAGGTAAAAAAAT
TACGGGCCATATATATTTGAGGAGAGTGCCAATGTCAGATGTTCCTGACGATGAAGAGCA
AGCAGCTAAATGGCTTCATGAATTGTTTATTAGAAAGGATAAGTTGCAAACTAGTTTCCA
TAAGACAGGAGACTTTTTCAAAGATACCGACATTGAACCCATCGAGCCAATAATAATTAA
ACCAAGAAAAAGTAGTCTTCTAAATTGGGTTGGTTGGATTGCTGTCGCTCTCATTCCAAT
TTTGTATCTGCTGTTTTCTATGATTGCTAGTGGACAAGTATTTTATGTACTCATTGGTGT
TTCCATTACTGTAGCTTTTTACATGCTCTTTAATTATGCAATTGGAACGACTAAAATAAG
CAAAGGATCAGCTTATGGAGGTAGAACAAAAAACGAGCATAAAGACGAGAAGAAAGAACA
ATAG

>g7370.t5 Gene=g7370 Length=284
MTSLISTIKASTAVHLCFAISYFTSGLVINILQCLLFIFIKPFNKKLFRTLIYYLCYSFH
CLWLLLNAEGTRFTKSKHEASVKFAQERNMTVLNHHLIPRTKGFTASLPVLKKKCAAIMD
VQLAFHEDDVDKPTVINLLRGKKITGHIYLRRVPMSDVPDDEEQAAKWLHELFIRKDKLQ
TSFHKTGDFFKDTDIEPIEPIIIKPRKSSLLNWVGWIAVALIPILYLLFSMIASGQVFYV
LIGVSITVAFYMLFNYAIGTTKISKGSAYGGRTKNEHKDEKKEQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g7370.t5 CDD cd07990 LPLAT_LCLAT1-like 33 151 1.88487E-26
2 g7370.t5 PANTHER PTHR10983:SF8 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE DELTA 62 275 1.6E-53
3 g7370.t5 PANTHER PTHR10983 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 62 275 1.6E-53
1 g7370.t5 Pfam PF16076 Acyltransferase C-terminus 137 216 1.3E-23
8 g7370.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
14 g7370.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 39 -
12 g7370.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 40 50 -
15 g7370.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 51 68 -
10 g7370.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 69 209 -
16 g7370.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 210 232 -
11 g7370.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 233 237 -
13 g7370.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 238 258 -
9 g7370.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 259 284 -
4 g7370.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 13 35 -
5 g7370.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 50 67 -
7 g7370.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 210 232 -
6 g7370.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 237 259 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values