General information for g7370.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma.
Parent gene
- The parent gene g7370 is located on chr_2: 23416798..23417766 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7370 | g7370.t6 | TSS | g7370.t6 | 23415793 | 23415793 |
| chr_2 | g7370 | g7370.t6 | isoform | g7370.t6 | 23416399 | 23417766 |
| chr_2 | g7370 | g7370.t6 | exon | g7370.t6.exon1 | 23416399 | 23416739 |
| chr_2 | g7370 | g7370.t6 | exon | g7370.t6.exon2 | 23416799 | 23417505 |
| chr_2 | g7370 | g7370.t6 | cds | g7370.t6.CDS1 | 23416810 | 23417505 |
| chr_2 | g7370 | g7370.t6 | exon | g7370.t6.exon3 | 23417566 | 23417766 |
| chr_2 | g7370 | g7370.t6 | cds | g7370.t6.CDS2 | 23417566 | 23417766 |
| chr_2 | g7370 | g7370.t6 | TTS | g7370.t6 | 23417944 | 23417944 |
Sequences
>g7370.t6 Gene=g7370 Length=1249
ATGACTTCGTTAATAAGTACAATTAAAGCCTCAACAGCTGTTCATTTGTGCTTTGCAATT
TCTTATTTCACATCAGGACTCGTAATAAACATTCTTCAATGTTTATTGTTCATCTTTATC
AAGCCATTTAATAAGAAGCTATTTAGAACTTTAATATACTATTTATGTTATTCATTCCAT
TGCCGTGAGTATAATATATAATTTATGCATATGCTAAATACTTATAATTTTTCAATTCAT
TTAAAATTCAGAATTAGTCGCAATTGGAGAGTGGTGGAGTGGAAGCACAGTTAAAGTTTA
TATTTCAAAGGAGGATTTTAAGAAAGCAGGCACTGAGCATGCATTACTGGTTATGAACCA
TAGTTATGAAACTGATTGGCTCTTTGGATGGATGTTTTGTGAAAAAGTTGGTGTGCTTGG
AAACTGCAAAGCATATGCTAAGAAAGTTATTTCGTTAATTCCAACTATCGGGTGGTCATG
GAAATTTGCTGAATTTGTCTTCTTAGAAAGATCTTTTGATAAAGATAAAGAAATTATAAT
TAAACAGCTTAATGAAATCTTTGATTATCCATCTCCAGTTTGGCTTTTATTAAATGCAGA
AGGCACTCGATTTACGAAATCAAAACATGAAGCTTCCGTAAAGTTTGCTCAAGAACGAAA
TATGACTGTTCTTAATCATCATTTAATTCCCCGTACAAAAGGTTTTACTGCTAGCTTGCC
AGTATTGAAAAAGAAGTGTGCTGCTATTATGGATGTACAACTTGCTTTTCATGAAGATGA
TGTTGACAAACCGACTGTCATAAATTTGTTAAGAGGTAAAAAAATTACGGGCCATATATA
TTTGAGGAGAGTGCCAATGTCAGATGTTCCTGACGATGAAGAGCAAGCAGCTAAATGGCT
TCATGAATTGTTTATTAGAAAGGATAAGTTGCAAACTAGTTTCCATAAGACAGGAGACTT
TTTCAAAGATACCGACATTGAACCCATCGAGCCAATAATAATTAAACCAAGAAAAAGTAG
TCTTCTAAATTGGGTTGGTTGGATTGCTGTCGCTCTCATTCCAATTTTGTATCTGCTGTT
TTCTATGATTGCTAGTGGACAAGTATTTTATGTACTCATTGGTGTTTCCATTACTGTAGC
TTTTTACATGCTCTTTAATTATGCAATTGGAACGACTAAAATAAGCAAAGGATCAGCTTA
TGGAGGTAGAACAAAAAACGAGCATAAAGACGAGAAGAAAGAACAATAG
>g7370.t6 Gene=g7370 Length=298
MNHSYETDWLFGWMFCEKVGVLGNCKAYAKKVISLIPTIGWSWKFAEFVFLERSFDKDKE
IIIKQLNEIFDYPSPVWLLLNAEGTRFTKSKHEASVKFAQERNMTVLNHHLIPRTKGFTA
SLPVLKKKCAAIMDVQLAFHEDDVDKPTVINLLRGKKITGHIYLRRVPMSDVPDDEEQAA
KWLHELFIRKDKLQTSFHKTGDFFKDTDIEPIEPIIIKPRKSSLLNWVGWIAVALIPILY
LLFSMIASGQVFYVLIGVSITVAFYMLFNYAIGTTKISKGSAYGGRTKNEHKDEKKEQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g7370.t6 | CDD | cd07990 | LPLAT_LCLAT1-like | 1 | 165 | 1.99941E-56 |
| 3 | g7370.t6 | PANTHER | PTHR10983:SF8 | 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE DELTA | 1 | 289 | 8.0E-78 |
| 4 | g7370.t6 | PANTHER | PTHR10983 | 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED | 1 | 289 | 8.0E-78 |
| 2 | g7370.t6 | Pfam | PF01553 | Acyltransferase | 1 | 94 | 2.7E-8 |
| 1 | g7370.t6 | Pfam | PF16076 | Acyltransferase C-terminus | 151 | 230 | 1.4E-23 |
| 9 | g7370.t6 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 223 | - |
| 12 | g7370.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 224 | 246 | - |
| 10 | g7370.t6 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 247 | 251 | - |
| 11 | g7370.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 252 | 272 | - |
| 8 | g7370.t6 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 273 | 298 | - |
| 7 | g7370.t6 | SMART | SM00563 | plsc_2 | 1 | 119 | 4.1E-9 |
| 6 | g7370.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 224 | 246 | - |
| 5 | g7370.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 251 | 273 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
