Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7372 g7372.t2 isoform g7372.t2 23429564 23441675
chr_2 g7372 g7372.t2 exon g7372.t2.exon1 23429564 23429639
chr_2 g7372 g7372.t2 cds g7372.t2.CDS1 23429599 23429639
chr_2 g7372 g7372.t2 exon g7372.t2.exon2 23430114 23430289
chr_2 g7372 g7372.t2 cds g7372.t2.CDS2 23430114 23430289
chr_2 g7372 g7372.t2 exon g7372.t2.exon3 23434016 23434222
chr_2 g7372 g7372.t2 cds g7372.t2.CDS3 23434016 23434098
chr_2 g7372 g7372.t2 exon g7372.t2.exon4 23441291 23441675
chr_2 g7372 g7372.t2 TSS g7372.t2 NA NA
chr_2 g7372 g7372.t2 TTS g7372.t2 NA NA

Sequences

>g7372.t2 Gene=g7372 Length=844
TTGTTATTGTTAGTCTAGAAAAATCTCCCTTTCACATGAAATCAAGGGTAAATTTTATAT
TCTTTTCGTTTTTTCTCTCCTCGTTTTTCCTTTTGTTTTATTATTGTATCAAAATAGATA
GGAAGGTGAAGAAGATTGAGGGCGAATTAGACAAAGAAGAGAAAAGAAAATCGAGTTTGC
CTTATTGCGCTTTTGTATATGTTTGTTAAAAAAATATGTTGTTGGCAAAGTTTATTGTCA
TTATTTATCCTTCACACTTCATACTGCGAAATGCTTGTCTTTTATTTCATACATGAATGC
TTTTAATGTCACAAAGTGAATAAAAATAGTAAAAGAACACTGCTGTTGTTGTTGTGATGG
ACTATCGGCTTAATCTAAGAAGAAAACCAATTTCTCACATTCCTGATCGTTTGACATCGT
GATTGTGATTGTTGTCTTGGTCTTTCGATGATGATTTAATTGAATAATATTCAATTCAAT
TAAAAACATGATAAAAGATGTGAAGCGTAATGTTTCTATTTGCAGTAAGAGTTGATCTGT
GCTATCGATCAGTTAGTGCTCGTCCAACAGCAATTGAAAATGGAAAGTTCTATGTGATCC
TTTTCCATTTCCGTTTTTTTCCTTCTTTTATTCTTTTTACCAAGAAGAAAATTCTTTTTT
TGTTGCTTTTCCTCCAGTTTTGCTTTTTTGTGTATGTGTGTGATGGTGATGATGAGGCAA
TTGTTATCAATGAATTATTTGCTGAATTCGCACTTTGTCTCAGCTTTATACAAATTCTCA
TAATAGAGAAAAAGTTTCTTTTAGATTGAATTTTTACTTGATTCAAGTTTTAATATTGTC
GCAT

>g7372.t2 Gene=g7372 Length=99
MFLFAVRVDLCYRSVSARPTAIENGKFYVILFHFRFFPSFILFTKKKILFLLLFLQFCFF
VYVCDGDDEAIVINELFAEFALCLSFIQILIIEKKFLLD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g7372.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 17 -
8 g7372.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 1 -
9 g7372.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 2 12 -
13 g7372.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 13 17 -
5 g7372.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 18 26 -
10 g7372.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 27 43 -
4 g7372.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 44 47 -
12 g7372.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 48 64 -
6 g7372.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 65 69 -
11 g7372.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 70 92 -
3 g7372.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 93 99 -
2 g7372.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 41 63 -
1 g7372.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 70 92 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values