Gene loci information

Transcript annotation

  • This transcript has been annotated as Diuretic hormone receptor.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7384 g7384.t3 TSS g7384.t3 23492189 23492189
chr_2 g7384 g7384.t3 isoform g7384.t3 23492190 23514314
chr_2 g7384 g7384.t3 exon g7384.t3.exon1 23492190 23492299
chr_2 g7384 g7384.t3 exon g7384.t3.exon2 23502014 23502172
chr_2 g7384 g7384.t3 exon g7384.t3.exon3 23502294 23502417
chr_2 g7384 g7384.t3 exon g7384.t3.exon4 23507065 23507281
chr_2 g7384 g7384.t3 cds g7384.t3.CDS1 23507142 23507281
chr_2 g7384 g7384.t3 exon g7384.t3.exon5 23508998 23509091
chr_2 g7384 g7384.t3 cds g7384.t3.CDS2 23508998 23509091
chr_2 g7384 g7384.t3 exon g7384.t3.exon6 23509946 23510042
chr_2 g7384 g7384.t3 cds g7384.t3.CDS3 23509946 23510042
chr_2 g7384 g7384.t3 exon g7384.t3.exon7 23510928 23511008
chr_2 g7384 g7384.t3 cds g7384.t3.CDS4 23510928 23511008
chr_2 g7384 g7384.t3 exon g7384.t3.exon8 23512215 23512423
chr_2 g7384 g7384.t3 cds g7384.t3.CDS5 23512215 23512423
chr_2 g7384 g7384.t3 exon g7384.t3.exon9 23512819 23513240
chr_2 g7384 g7384.t3 cds g7384.t3.CDS6 23512819 23513184
chr_2 g7384 g7384.t3 exon g7384.t3.exon10 23513338 23513630
chr_2 g7384 g7384.t3 exon g7384.t3.exon11 23514264 23514314
chr_2 g7384 g7384.t3 TTS g7384.t3 NA NA

Sequences

>g7384.t3 Gene=g7384 Length=1857
AGTGTGTCAAAAGTCTTCTAACGCTCAAGAAGTTTAAACGTGAAATATTTAGTGACAAAA
AATTTTTCCGCTGTCATTGATGAGTGAAATATTATAAATAATAAAAAATTAAATAATAAA
AATTTTATGTCTATTGAAAAATTTTCAAAGTGGCGTTTACAAATCTTACATTAATTGGTG
CCGATGAGCATCTACTGCTAAGAACTAATAGCAGTATTGAATTAAGTTGTTTAGCAGAAA
TTGAAGCTGATAAAATTCTTCATCCTAAGAATGACAGCGAATATTGCCGACCAAATTTTG
ATGAAGTACTGTGCTGGCCAAGAACGAAATTCGATACGACTGTCGTACAGCCGTGTTTTT
CGGAATTTCACAATGTCAAATATGACGTTACAAATAATGCAACGAGATATTGCAGTGTAA
CAGGTCAATGGGATCTCTCAAATTATCTTAATTGCCACCCAATAAGTCCAATGAATCGAA
GTTGCAGTGAATGGGACTTTTCATGGGATATTAGATGTTCAGCTTATGCCACCAGCATTA
TTTATTACATTGGATACACAATAAGCCTCATCGCACTCATATTGGCTGTAATTGTTTTCA
TGAATTTCAAAGAACTTCGATGTTTGAGAAATACCATTCACATAAATTTATTTTTAACTT
ACATTTTATCGATATTTTTATGGATTTTAACACTAACATTGCAGATGTTTTTGGGCAATG
GCAGCACAGTTGGTTGTATATTTTCAGCAATATTTCTTCATTATTTTATGCTCACAAACT
TTTTTTGGATGCTTGTGGAAGGTCTCTATCTCTATATGCTGGTTGTACAAACATTTTCCG
GCGATAACATCCGATTTAATCTATATTTTATCATTGGATACGGCTTTCCAAGTATATTCG
TGGGTTTTTGGACGATATTTAAAGCGCTTCAAACTGAATCAGACAATGAAATTGCTGCAA
GCACACCATCCGAGACTGAATCTCGTCTTGTTTGTTCATGGATGCGAGAATCGAATATCG
ATTGGATCATTCAAGGCCCAGCATGCGGTGTTCTTATTATAAATCTTATTTTTTTGATTC
GAATTATGTGGGTACTTATAACAAAATTGCGTTCAGCAAATACCGTAGAAACGAGGCAAT
ATCGAAAAGCATCAAAAGCTCTTCTCGTGCTAATTCCATTGCTAGGTATAACATATTTAG
TAGTCATTGCGGGTCCGAGTACTGGCGTTGAAAGTCACATTTTTGCGATACTTCGTGCAG
TTTTATTAAGTATTCAAGGTTTCTGCGTGGCACTTTTTTATTGCTTTTTCAATTCAGAAG
TGCGACAAGCATTAAAGCATCGTTTCCATCGATTAAGAGATTCACGCACACTTAGCGCAT
CAAATTCAATAAGAAGTCGACGTTATACAATGTCTAAAGACTACTCACCTCGATCTAGAA
CTGAAAGCATACGGTGAGATTCAAAATAAAATCTTCTATAAAATTGGCACAAAAAAATGT
CTGTTTAAAATTGACTATCTCGTGTGCTCTATTCATCTTCTACTTATCACACACATTCAT
TCACGCTCTTTTTTTATTTATGAAAACATCATCAAAAACTTTTTATAATTTTTTAATAAC
AAATGTAAGTTTTTTTATTCTCATGACTCTTGAGTTCCTTGCATTTGCATTTTTGTTATA
TTTGTTACTAATAAGTTACTTACTTTAGAATTTTAAAAGTAGAAATTAGAATTGAAATTT
ATAAAAAATTGATTATAACATCAGTTTTAAAATTTGTAAGCTAAAAATAGATTCCAATTT
CATAAACAATAAATTTGAAAACCTTCAATTAATTTTCTGTAGAATTTTTTAAACTTT

>g7384.t3 Gene=g7384 Length=328
MNRSCSEWDFSWDIRCSAYATSIIYYIGYTISLIALILAVIVFMNFKELRCLRNTIHINL
FLTYILSIFLWILTLTLQMFLGNGSTVGCIFSAIFLHYFMLTNFFWMLVEGLYLYMLVVQ
TFSGDNIRFNLYFIIGYGFPSIFVGFWTIFKALQTESDNEIAASTPSETESRLVCSWMRE
SNIDWIIQGPACGVLIINLIFLIRIMWVLITKLRSANTVETRQYRKASKALLVLIPLLGI
TYLVVIAGPSTGVESHIFAILRAVLLSIQGFCVALFYCFFNSEVRQALKHRFHRLRDSRT
LSASNSIRSRRYTMSKDYSPRSRTESIR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g7384.t3 Gene3D G3DSA:1.20.1070.10 - 13 316 6.5E-83
2 g7384.t3 PANTHER PTHR45620 PDF RECEPTOR-LIKE PROTEIN-RELATED 20 322 2.8E-114
3 g7384.t3 PANTHER PTHR45620:SF15 DIURETIC HORMONE 44 RECEPTOR 1-RELATED 20 322 2.8E-114
4 g7384.t3 PRINTS PR00249 Secretin-like GPCR superfamily signature 23 47 2.7E-56
5 g7384.t3 PRINTS PR00249 Secretin-like GPCR superfamily signature 55 79 2.7E-56
12 g7384.t3 PRINTS PR01127 Diuretic hormone receptor signature 64 80 7.8E-22
10 g7384.t3 PRINTS PR00249 Secretin-like GPCR superfamily signature 91 114 2.7E-56
14 g7384.t3 PRINTS PR01127 Diuretic hormone receptor signature 117 132 7.8E-22
6 g7384.t3 PRINTS PR00249 Secretin-like GPCR superfamily signature 129 154 2.7E-56
15 g7384.t3 PRINTS PR01127 Diuretic hormone receptor signature 173 188 7.8E-22
9 g7384.t3 PRINTS PR00249 Secretin-like GPCR superfamily signature 185 210 2.7E-56
7 g7384.t3 PRINTS PR00249 Secretin-like GPCR superfamily signature 227 247 2.7E-56
11 g7384.t3 PRINTS PR01127 Diuretic hormone receptor signature 239 252 7.8E-22
8 g7384.t3 PRINTS PR00249 Secretin-like GPCR superfamily signature 259 280 2.7E-56
13 g7384.t3 PRINTS PR01127 Diuretic hormone receptor signature 315 328 7.8E-22
1 g7384.t3 Pfam PF00002 7 transmembrane receptor (Secretin family) 20 273 2.9E-63
25 g7384.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 22 -
32 g7384.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 23 46 -
18 g7384.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 47 57 -
26 g7384.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 58 81 -
23 g7384.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 82 92 -
31 g7384.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 93 117 -
21 g7384.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 118 128 -
29 g7384.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 129 150 -
24 g7384.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 151 184 -
30 g7384.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 185 210 -
20 g7384.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 211 230 -
27 g7384.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 231 251 -
22 g7384.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 252 256 -
28 g7384.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 257 280 -
19 g7384.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 281 328 -
40 g7384.t3 ProSiteProfiles PS50261 G-protein coupled receptors family 2 profile 2. 21 281 40.835
16 g7384.t3 SUPERFAMILY SSF81321 Family A G protein-coupled receptor-like 14 310 2.84E-13
39 g7384.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 22 44 -
38 g7384.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 56 78 -
34 g7384.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 93 115 -
37 g7384.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 128 150 -
33 g7384.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 186 208 -
36 g7384.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 231 253 -
35 g7384.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 258 280 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0007186 G protein-coupled receptor signaling pathway BP
GO:0008036 diuretic hormone receptor activity MF
GO:0016021 integral component of membrane CC
GO:0004888 transmembrane signaling receptor activity MF
GO:0007166 cell surface receptor signaling pathway BP
GO:0004930 G protein-coupled receptor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed