General information for g7392.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Diuretic hormone receptor.
Parent gene
- The parent gene g7392 is located on chr_2: 23561076..23562355 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7392 | g7392.t1 | isoform | g7392.t1 | 23553450 | 23562030 |
| chr_2 | g7392 | g7392.t1 | exon | g7392.t1.exon1 | 23553450 | 23553459 |
| chr_2 | g7392 | g7392.t1 | cds | g7392.t1.CDS1 | 23553450 | 23553459 |
| chr_2 | g7392 | g7392.t1 | exon | g7392.t1.exon2 | 23553520 | 23553606 |
| chr_2 | g7392 | g7392.t1 | cds | g7392.t1.CDS2 | 23553520 | 23553606 |
| chr_2 | g7392 | g7392.t1 | exon | g7392.t1.exon3 | 23557624 | 23557700 |
| chr_2 | g7392 | g7392.t1 | cds | g7392.t1.CDS3 | 23557624 | 23557700 |
| chr_2 | g7392 | g7392.t1 | exon | g7392.t1.exon4 | 23557873 | 23557983 |
| chr_2 | g7392 | g7392.t1 | cds | g7392.t1.CDS4 | 23557873 | 23557983 |
| chr_2 | g7392 | g7392.t1 | exon | g7392.t1.exon5 | 23558067 | 23558252 |
| chr_2 | g7392 | g7392.t1 | cds | g7392.t1.CDS5 | 23558067 | 23558252 |
| chr_2 | g7392 | g7392.t1 | exon | g7392.t1.exon6 | 23560775 | 23560914 |
| chr_2 | g7392 | g7392.t1 | cds | g7392.t1.CDS6 | 23560775 | 23560914 |
| chr_2 | g7392 | g7392.t1 | exon | g7392.t1.exon7 | 23561078 | 23561131 |
| chr_2 | g7392 | g7392.t1 | cds | g7392.t1.CDS7 | 23561078 | 23561131 |
| chr_2 | g7392 | g7392.t1 | exon | g7392.t1.exon8 | 23561796 | 23561946 |
| chr_2 | g7392 | g7392.t1 | cds | g7392.t1.CDS8 | 23561796 | 23561946 |
| chr_2 | g7392 | g7392.t1 | exon | g7392.t1.exon9 | 23562007 | 23562030 |
| chr_2 | g7392 | g7392.t1 | cds | g7392.t1.CDS9 | 23562007 | 23562030 |
| chr_2 | g7392 | g7392.t1 | TTS | g7392.t1 | 23562362 | 23562362 |
| chr_2 | g7392 | g7392.t1 | TSS | g7392.t1 | NA | NA |
Sequences
>g7392.t1 Gene=g7392 Length=840
ATGGTTGAAGGTCTTTATCTTTATCTCTTGGTTGTTGAAACATTCTCACGTATTGAAGTA
ATAAATAAGTTTGCTGTTTACGCTTTCATAGGATACGGTATTCCAGCAGTATTCGCAATG
ACATGGTCTATTGTTAAAGGAGTCATTGGTATACAACTAGAGGATACTCTCGAGGTTGAG
ATGGAATGCCTGTGGATGCAAGAGTCGAGTTTAGATTGGATATTCAAGGGTCCAGCGTGC
GCAGTTTTAATCATAAACCTCATTTTTCTCACGAGCATCATGTGGGTGCTTATAACGAAA
TTGCGGTCCGCAAATACAGCAGAAACGCGTCAATATAGAAAAGCATCAAAAGCATTACTC
GTGCTTATACCACTCTTTGGATTGACATATTTGATTGTGCTGTACATCCCGAATGAGGGA
ATTTTGAGGAAAGTTTTTGATATTGCACGAGCATTTCTGTTAAGTACACAGGGATTTTTT
GTTGCACTTTTTTATTGTTTTCTCAATTCGGAAGTAAGGAAGGCAATCAAGAAGAGCATA
AATCGTTGGCGTGATGCAAGAAATATAATCAGACCGCAATTTCGAAGCTCATCAAAGCAG
AATACGCGAAGGTTTATAAATAATGGAGCTAATCCATCGCCGCAATCAAATTTCAAGAGT
TTAAGACCGAATTCTAACAATGGGAAAAAACGTGAATCGAATGTCACAACAACATCATTA
TTGACCGAGATTCCAACAAATTATTGCGGTGGTGTTCGTGACTCCAATGGAGTTATGCAA
GCATTGAATCCGCCCAAAAACACAAGTCCATTAATGGGACTTGAGGAAAATTCGGTCTAG
>g7392.t1 Gene=g7392 Length=279
MVEGLYLYLLVVETFSRIEVINKFAVYAFIGYGIPAVFAMTWSIVKGVIGIQLEDTLEVE
MECLWMQESSLDWIFKGPACAVLIINLIFLTSIMWVLITKLRSANTAETRQYRKASKALL
VLIPLFGLTYLIVLYIPNEGILRKVFDIARAFLLSTQGFFVALFYCFLNSEVRKAIKKSI
NRWRDARNIIRPQFRSSSKQNTRRFINNGANPSPQSNFKSLRPNSNNGKKRESNVTTTSL
LTEIPTNYCGGVRDSNGVMQALNPPKNTSPLMGLEENSV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g7392.t1 | Gene3D | G3DSA:1.20.1070.10 | - | 1 | 205 | 9.6E-53 |
| 24 | g7392.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 237 | - |
| 2 | g7392.t1 | PANTHER | PTHR45620 | PDF RECEPTOR-LIKE PROTEIN-RELATED | 1 | 211 | 4.2E-76 |
| 3 | g7392.t1 | PANTHER | PTHR45620:SF15 | DIURETIC HORMONE 44 RECEPTOR 1-RELATED | 1 | 211 | 4.2E-76 |
| 4 | g7392.t1 | PRINTS | PR00249 | Secretin-like GPCR superfamily signature | 24 | 49 | 4.1E-28 |
| 6 | g7392.t1 | PRINTS | PR00249 | Secretin-like GPCR superfamily signature | 73 | 98 | 4.1E-28 |
| 5 | g7392.t1 | PRINTS | PR00249 | Secretin-like GPCR superfamily signature | 115 | 135 | 4.1E-28 |
| 7 | g7392.t1 | PRINTS | PR00249 | Secretin-like GPCR superfamily signature | 147 | 168 | 4.1E-28 |
| 1 | g7392.t1 | Pfam | PF00002 | 7 transmembrane receptor (Secretin family) | 1 | 161 | 1.5E-33 |
| 12 | g7392.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 23 | - |
| 16 | g7392.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 24 | 53 | - |
| 13 | g7392.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 54 | 72 | - |
| 15 | g7392.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 73 | 98 | - |
| 11 | g7392.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 99 | 117 | - |
| 18 | g7392.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 118 | 136 | - |
| 14 | g7392.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 137 | 147 | - |
| 17 | g7392.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 148 | 168 | - |
| 10 | g7392.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 169 | 279 | - |
| 23 | g7392.t1 | ProSitePatterns | PS00650 | G-protein coupled receptors family 2 signature 2. | 157 | 172 | - |
| 25 | g7392.t1 | ProSiteProfiles | PS50261 | G-protein coupled receptors family 2 profile 2. | 1 | 169 | 25.599 |
| 8 | g7392.t1 | SUPERFAMILY | SSF81321 | Family A G protein-coupled receptor-like | 79 | 197 | 3.66E-9 |
| 20 | g7392.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 42 | - |
| 21 | g7392.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 79 | 98 | - |
| 19 | g7392.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 119 | 136 | - |
| 22 | g7392.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 146 | 168 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | BP |
| GO:0016021 | integral component of membrane | CC |
| GO:0004888 | transmembrane signaling receptor activity | MF |
| GO:0007166 | cell surface receptor signaling pathway | BP |
| GO:0004930 | G protein-coupled receptor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed