Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Diuretic hormone receptor.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7392 g7392.t2 isoform g7392.t2 23553450 23562030
chr_2 g7392 g7392.t2 exon g7392.t2.exon1 23553450 23553459
chr_2 g7392 g7392.t2 cds g7392.t2.CDS1 23553450 23553459
chr_2 g7392 g7392.t2 exon g7392.t2.exon2 23553520 23553606
chr_2 g7392 g7392.t2 cds g7392.t2.CDS2 23553520 23553606
chr_2 g7392 g7392.t2 exon g7392.t2.exon3 23557624 23557700
chr_2 g7392 g7392.t2 cds g7392.t2.CDS3 23557624 23557700
chr_2 g7392 g7392.t2 exon g7392.t2.exon4 23557873 23557983
chr_2 g7392 g7392.t2 cds g7392.t2.CDS4 23557873 23557983
chr_2 g7392 g7392.t2 exon g7392.t2.exon5 23558067 23558252
chr_2 g7392 g7392.t2 cds g7392.t2.CDS5 23558067 23558252
chr_2 g7392 g7392.t2 exon g7392.t2.exon6 23560775 23560914
chr_2 g7392 g7392.t2 cds g7392.t2.CDS6 23560775 23560914
chr_2 g7392 g7392.t2 exon g7392.t2.exon7 23561796 23561946
chr_2 g7392 g7392.t2 cds g7392.t2.CDS7 23561796 23561946
chr_2 g7392 g7392.t2 exon g7392.t2.exon8 23562007 23562030
chr_2 g7392 g7392.t2 cds g7392.t2.CDS8 23562007 23562030
chr_2 g7392 g7392.t2 TTS g7392.t2 23562362 23562362
chr_2 g7392 g7392.t2 TSS g7392.t2 NA NA

Sequences

>g7392.t2 Gene=g7392 Length=786
ATGGTTGAAGGTCTTTATCTTTATCTCTTGGTTGTTGAAACATTCTCACGTATTGAAGTA
ATAAATAAGTTTGCTGTTTACGCTTTCATAGGATACGGTATTCCAGCAGTATTCGCAATG
ACATGGTCTATTGTTAAAGGAGTCATTGGTATACAACTAGAGGATACTCTCGAGGTTGAG
ATGGAATGCCTGTGGATGCAAGAGTCGAGTTTAGATTGGATATTCAAGGGTCCAGCGTGC
GCAGTTTTAATCATAAACCTCATTTTTCTCACGAGCATCATGTGGGTGCTTATAACGAAA
TTGCGGTCCGCAAATACAGCAGAAACGCGTCAATATAGAAAAGCATCAAAAGCATTACTC
GTGCTTATACCACTCTTTGGATTGACATATTTGATTGTGCTGTACATCCCGAATGAGGGA
ATTTTGAGGAAAGTTTTTGATATTGCACGAGCATTTCTGTTAAGTACACAGGGATTTTTT
GTTGCACTTTTTTATTGTTTTCTCAATTCGGAAGTAAGGAAGGCAATCAAGAAGAGCATA
AATCGTTGGCGTGATGCAAGAAATATAATCAGACCGCAATTTCGAAGCTCATCAAAGCAG
AATACGCGAAGACCGAATTCTAACAATGGGAAAAAACGTGAATCGAATGTCACAACAACA
TCATTATTGACCGAGATTCCAACAAATTATTGCGGTGGTGTTCGTGACTCCAATGGAGTT
ATGCAAGCATTGAATCCGCCCAAAAACACAAGTCCATTAATGGGACTTGAGGAAAATTCG
GTCTAG

>g7392.t2 Gene=g7392 Length=261
MVEGLYLYLLVVETFSRIEVINKFAVYAFIGYGIPAVFAMTWSIVKGVIGIQLEDTLEVE
MECLWMQESSLDWIFKGPACAVLIINLIFLTSIMWVLITKLRSANTAETRQYRKASKALL
VLIPLFGLTYLIVLYIPNEGILRKVFDIARAFLLSTQGFFVALFYCFLNSEVRKAIKKSI
NRWRDARNIIRPQFRSSSKQNTRRPNSNNGKKRESNVTTTSLLTEIPTNYCGGVRDSNGV
MQALNPPKNTSPLMGLEENSV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g7392.t2 Gene3D G3DSA:1.20.1070.10 - 1 204 5.5E-53
24 g7392.t2 MobiDBLite mobidb-lite consensus disorder prediction 194 218 -
2 g7392.t2 PANTHER PTHR45620 PDF RECEPTOR-LIKE PROTEIN-RELATED 1 253 7.6E-78
3 g7392.t2 PANTHER PTHR45620:SF15 DIURETIC HORMONE 44 RECEPTOR 1-RELATED 1 253 7.6E-78
4 g7392.t2 PRINTS PR00249 Secretin-like GPCR superfamily signature 24 49 3.3E-28
6 g7392.t2 PRINTS PR00249 Secretin-like GPCR superfamily signature 73 98 3.3E-28
5 g7392.t2 PRINTS PR00249 Secretin-like GPCR superfamily signature 115 135 3.3E-28
7 g7392.t2 PRINTS PR00249 Secretin-like GPCR superfamily signature 147 168 3.3E-28
1 g7392.t2 Pfam PF00002 7 transmembrane receptor (Secretin family) 1 161 1.3E-33
12 g7392.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 23 -
16 g7392.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 24 53 -
13 g7392.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 54 72 -
15 g7392.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 73 98 -
11 g7392.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 99 117 -
18 g7392.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 118 136 -
14 g7392.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 137 147 -
17 g7392.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 148 168 -
10 g7392.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 169 261 -
23 g7392.t2 ProSitePatterns PS00650 G-protein coupled receptors family 2 signature 2. 157 172 -
25 g7392.t2 ProSiteProfiles PS50261 G-protein coupled receptors family 2 profile 2. 1 169 25.599
8 g7392.t2 SUPERFAMILY SSF81321 Family A G protein-coupled receptor-like 79 204 1.28E-9
20 g7392.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 20 42 -
21 g7392.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 79 98 -
19 g7392.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 119 136 -
22 g7392.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 146 168 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007186 G protein-coupled receptor signaling pathway BP
GO:0016021 integral component of membrane CC
GO:0004888 transmembrane signaling receptor activity MF
GO:0007166 cell surface receptor signaling pathway BP
GO:0004930 G protein-coupled receptor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed