General information for g7412.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been not been annotated.
Parent gene
- The parent gene g7412 is located on chr_2: 23609553..23609931 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7412 | g7412.t1 | isoform | g7412.t1 | 23609553 | 23609931 |
| chr_2 | g7412 | g7412.t1 | exon | g7412.t1.exon1 | 23609553 | 23609707 |
| chr_2 | g7412 | g7412.t1 | cds | g7412.t1.CDS1 | 23609553 | 23609707 |
| chr_2 | g7412 | g7412.t1 | exon | g7412.t1.exon2 | 23609790 | 23609931 |
| chr_2 | g7412 | g7412.t1 | cds | g7412.t1.CDS2 | 23609790 | 23609931 |
| chr_2 | g7412 | g7412.t1 | TSS | g7412.t1 | NA | NA |
| chr_2 | g7412 | g7412.t1 | TTS | g7412.t1 | NA | NA |
Sequences
>g7412.t1 Gene=g7412 Length=297
ATGGCACCACCAAAAACAAGCGGTAAAGCAGCAAAGAAAGCCGGAAAGGCTCAGAAGAAT
ATCTCAAAGGATGACAAGAAGAAGAAGCGTCATCGTCGTAAGGAATCATATGCAATTTAC
ATCTTCAAAGTCTTGAAAACAACTGAAGCATCACGCTTGGCTCATTACAACAAGCGCTCA
ACAATCACATCACGAGAAATCCAAACAGCCGTCCGTCTTCTCTTGCCTGGTGAATTGGCT
AAGCACGCTGTCTCAGAAGGCACAAAAGCTGTCACCAAATACACATCATCAAAGTAA
>g7412.t1 Gene=g7412 Length=98
MAPPKTSGKAAKKAGKAQKNISKDDKKKKRHRRKESYAIYIFKVLKTTEASRLAHYNKRS
TITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g7412.t1 | Gene3D | G3DSA:1.10.20.10 | Histone | 1 | 47 | 2.1E-7 |
| 13 | g7412.t1 | Gene3D | G3DSA:1.10.20.10 | Histone | 48 | 98 | 1.6E-27 |
| 11 | g7412.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - |
| 1 | g7412.t1 | PANTHER | PTHR23428:SF125 | HISTONE H2B 3-RELATED | 1 | 47 | 9.4E-35 |
| 3 | g7412.t1 | PANTHER | PTHR23428 | HISTONE H2B | 1 | 47 | 9.4E-35 |
| 2 | g7412.t1 | PANTHER | PTHR23428:SF125 | HISTONE H2B 3-RELATED | 48 | 98 | 9.4E-35 |
| 4 | g7412.t1 | PANTHER | PTHR23428 | HISTONE H2B | 48 | 98 | 9.4E-35 |
| 6 | g7412.t1 | PRINTS | PR00621 | Histone H2B signature | 51 | 68 | 6.6E-26 |
| 5 | g7412.t1 | PRINTS | PR00621 | Histone H2B signature | 68 | 81 | 6.6E-26 |
| 7 | g7412.t1 | PRINTS | PR00621 | Histone H2B signature | 81 | 94 | 6.6E-26 |
| 10 | g7412.t1 | ProSitePatterns | PS00357 | Histone H2B signature. | 65 | 87 | - |
| 9 | g7412.t1 | SMART | SM00427 | h2b3 | 27 | 96 | 6.5E-32 |
| 8 | g7412.t1 | SUPERFAMILY | SSF47113 | Histone-fold | 9 | 98 | 2.18E-34 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
| GO:0046982 | protein heterodimerization activity | MF |
| GO:0000786 | nucleosome | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
