General information for g7449.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Titin.
Parent gene
- The parent gene g7449 is located on chr_2: 23783342..23784395 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7449 | g7449.t4 | isoform | g7449.t4 | 23780080 | 23784395 |
| chr_2 | g7449 | g7449.t4 | exon | g7449.t4.exon1 | 23780080 | 23780519 |
| chr_2 | g7449 | g7449.t4 | cds | g7449.t4.CDS1 | 23780080 | 23780519 |
| chr_2 | g7449 | g7449.t4 | TTS | g7449.t4 | 23780088 | 23780088 |
| chr_2 | g7449 | g7449.t4 | exon | g7449.t4.exon2 | 23783342 | 23783698 |
| chr_2 | g7449 | g7449.t4 | cds | g7449.t4.CDS2 | 23783342 | 23783507 |
| chr_2 | g7449 | g7449.t4 | exon | g7449.t4.exon3 | 23784290 | 23784395 |
| chr_2 | g7449 | g7449.t4 | TSS | g7449.t4 | 23784395 | 23784395 |
Sequences
>g7449.t4 Gene=g7449 Length=903
AGTTTAGTGCCACTCTTCGCTCGCTCAACATTAAAATCCCAACGTCTTGAAATTTGCAGG
AGCTCTTTATACCTGCTCATTTCAATACCAGAAGCCGTGCAAAGAGTTGATTAATTTTTT
TGTAAATTATTATTTTAAATCGAAATTATTCTCTATCGAACTTAAATATTAACACTGACA
AAACAACAACAACAAACACACAAACACAACACAATCAAAAGAAATAAATTGAAAAAAAGT
TCAGTTAATAATAATAAATAAAATTACTTTTGATTCATGTGGGATTAAATAGTAAAAATG
CAACGAAATCAACAACAACAGCAAATTTCAAAGCAGCAATCATATTCCTCATCTCAACAA
CAGGAATATGTACAGCAGCAACATCAACAATTTTCAACTCAGCAACGAGTTGAACAATCT
TATACCACTACTCGACAAGTGACACAGCAAACGCAACAAAGAGTGCAACATGGTGGCTAT
ATTCAACAAATTCAGGGACCAACGACCCCAAGTAGTACACCATCTGCTTTGCAATACATT
CAGCAACCAACAACACCAACAGCAGCGACACCAACTAACAATTATTCACCACCCATTTTT
GAACAAATTTTCAAGAATGCTCGATTTGCACAGGGTGGTAATGCACTCTTTGAAGGACGT
CTTAAAGGTACACCAATGCCAGAAGTTTCATGGACACGCAAAGGTGTTCCACTTTTCGAT
ACCAACAAATATCGCATGACGTACAATCAAACTACTGGTGAAGTTACTTTGACAATCAAC
CAAATTGGACCAGGTGATGAAGGGGAATACACTTGTCGTGCTCGCAATGCTGTTGGTGAA
GCTATTTGTTCTGTTTTTATTCAACCTGAGGGTTTGCCAGCTCCACAATTTCAACAATCA
AAG
>g7449.t4 Gene=g7449 Length=202
MQRNQQQQQISKQQSYSSSQQQEYVQQQHQQFSTQQRVEQSYTTTRQVTQQTQQRVQHGG
YIQQIQGPTTPSSTPSALQYIQQPTTPTAATPTNNYSPPIFEQIFKNARFAQGGNALFEG
RLKGTPMPEVSWTRKGVPLFDTNKYRMTYNQTTGEVTLTINQIGPGDEGEYTCRARNAVG
EAICSVFIQPEGLPAPQFQQSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7449.t4 | CDD | cd00096 | Ig | 116 | 186 | 1.0052E-15 |
| 5 | g7449.t4 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 99 | 201 | 3.1E-21 |
| 9 | g7449.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - |
| 2 | g7449.t4 | PANTHER | PTHR47633 | - | 16 | 189 | 8.2E-18 |
| 3 | g7449.t4 | PANTHER | PTHR47633:SF4 | - | 16 | 189 | 8.2E-18 |
| 1 | g7449.t4 | Pfam | PF07679 | Immunoglobulin I-set domain | 99 | 187 | 1.2E-19 |
| 10 | g7449.t4 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 98 | 189 | 10.263 |
| 7 | g7449.t4 | SMART | SM00409 | IG_3c | 105 | 191 | 0.0031 |
| 8 | g7449.t4 | SMART | SM00408 | igc2_5 | 111 | 180 | 4.4E-9 |
| 4 | g7449.t4 | SUPERFAMILY | SSF48726 | Immunoglobulin | 96 | 195 | 5.1E-21 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed