General information for g7463.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proton-coupled amino acid transporter-like protein CG1139.
Parent gene
- The parent gene g7463 is located on chr_2: 23884935..23886231 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7463 | g7463.t1 | TTS | g7463.t1 | 23882765 | 23882765 |
| chr_2 | g7463 | g7463.t1 | isoform | g7463.t1 | 23882906 | 23884935 |
| chr_2 | g7463 | g7463.t1 | exon | g7463.t1.exon1 | 23882906 | 23883103 |
| chr_2 | g7463 | g7463.t1 | cds | g7463.t1.CDS1 | 23882906 | 23883103 |
| chr_2 | g7463 | g7463.t1 | exon | g7463.t1.exon2 | 23883163 | 23883436 |
| chr_2 | g7463 | g7463.t1 | cds | g7463.t1.CDS2 | 23883163 | 23883436 |
| chr_2 | g7463 | g7463.t1 | exon | g7463.t1.exon3 | 23883500 | 23883632 |
| chr_2 | g7463 | g7463.t1 | cds | g7463.t1.CDS3 | 23883500 | 23883632 |
| chr_2 | g7463 | g7463.t1 | exon | g7463.t1.exon4 | 23883708 | 23883902 |
| chr_2 | g7463 | g7463.t1 | cds | g7463.t1.CDS4 | 23883708 | 23883902 |
| chr_2 | g7463 | g7463.t1 | exon | g7463.t1.exon5 | 23883974 | 23884094 |
| chr_2 | g7463 | g7463.t1 | cds | g7463.t1.CDS5 | 23883974 | 23884094 |
| chr_2 | g7463 | g7463.t1 | exon | g7463.t1.exon6 | 23884154 | 23884511 |
| chr_2 | g7463 | g7463.t1 | cds | g7463.t1.CDS6 | 23884154 | 23884511 |
| chr_2 | g7463 | g7463.t1 | exon | g7463.t1.exon7 | 23884671 | 23884699 |
| chr_2 | g7463 | g7463.t1 | cds | g7463.t1.CDS7 | 23884671 | 23884699 |
| chr_2 | g7463 | g7463.t1 | exon | g7463.t1.exon8 | 23884764 | 23884842 |
| chr_2 | g7463 | g7463.t1 | cds | g7463.t1.CDS8 | 23884764 | 23884842 |
| chr_2 | g7463 | g7463.t1 | exon | g7463.t1.exon9 | 23884910 | 23884935 |
| chr_2 | g7463 | g7463.t1 | cds | g7463.t1.CDS9 | 23884910 | 23884935 |
| chr_2 | g7463 | g7463.t1 | TSS | g7463.t1 | 23885222 | 23885222 |
Sequences
>g7463.t1 Gene=g7463 Length=1413
ATGGAATTAAATAATAATCCGATAAGAGATGAAGAGCTAGAAACAGCAATAGCCTTGGTT
CCAAAAAAAGAAGCTTCAAAAAAAGAAGAAGATTATGATCCACATAAACATCGTAATGTT
GCGCATCCAACTAGTAATTTCGATACGCTTGCACACTTGCTCAAAGGATGTTTGGGAACT
GGCATCTTAGCAATGCATGAAGCATTCAGAAATGCTGGATGGCTCAATGGTTTAATAAGT
ATGGCACTTATTGGATTTGTTTGTACATATTGTTTTCAAATTTTAATCAAGGCTCAATAT
GCCTTGTGTAAAAAACATCGTCGACCAATTTTATCTTATCCAGAGAGCATGAAGCTCGCT
CTTGAACAAGGTCCTGCTGCACTTAAATGGATTGCACCATCAGCAGTTATCGTTACAGAT
GGTTTTTTGATAATTTATCAGCTTGGTGTGTGCATTTGTTATATTGTTTTTGTCGCGGCA
AATGTTCAACTGATTGTTAAAGAATTTTATCAGTTTTATGATATTAAGTATATAATGTTA
TGGATATTTATTCCTATGCTTGCAATCAATTGCATCAAGAATCTCAAAATCCTTGCGCCA
TTTTCGACAGCGGCAAATGCCATAACATTTGTCGGTCTAGGTCTGGTGCTCTATTACGTT
TTTGACGATTTACCTTCATTGTCGGAACGACCTGCATTTGGCCCTATTGAATCATATCCG
CTCTATTTTGGAACTGTTTTGTTTGCACTTGAAGCCGTAGGAGTTTTTATAGCACTCGAG
GCTAATATGGAAAAGCCAAAAAATTTCGTATCGAAATTTGGTGTTTTAAATTCCGGCATG
ACAATTGTAACTATATTATACGGTTTCGTGGGATTTTTTGGTTATTTAAAATATGGTGAA
AAGTCAAAAGACAGTATCACTTTAAGTTTACCAGCTGGACTAGTTCCAATTATCACTCAG
GGATTGTTTACGTTTGCAATTTTCATATCTTATGCATTGCAATGTTACGTACCAATATCA
ATTATTTGGGAGAATTATTGCAGCGATGAAATGAAGAAATCAAATCATAGCGATAAATAC
TTATTGATATTACGTCTTCTTACTACGATTTTTACATTTATAATAGCTGCTGCTGTTCCG
CACTTGGGTCTTTTCATTTCACTTTTTGGCGCTTTCTGTCTGTCAATTTTAGGATTAGGC
TTTCCAGCTATTATGGAAATTTGTGTTTTGTGGCCAGACAAGTTTGGCAAACTCAATTGG
CATTTATGGAAGGACATTGCTTTAGTTATTTTTGCATTTGCTGGCTTAACGAGTGGAACA
TTTGCATCAATGAAAGATATAATTGCCACATTCTCAACAGATGCATCTGAAGTAGCAAAA
ACTTTTACCAATGCTACAATTGAGCAATCTTAG
>g7463.t1 Gene=g7463 Length=470
MELNNNPIRDEELETAIALVPKKEASKKEEDYDPHKHRNVAHPTSNFDTLAHLLKGCLGT
GILAMHEAFRNAGWLNGLISMALIGFVCTYCFQILIKAQYALCKKHRRPILSYPESMKLA
LEQGPAALKWIAPSAVIVTDGFLIIYQLGVCICYIVFVAANVQLIVKEFYQFYDIKYIML
WIFIPMLAINCIKNLKILAPFSTAANAITFVGLGLVLYYVFDDLPSLSERPAFGPIESYP
LYFGTVLFALEAVGVFIALEANMEKPKNFVSKFGVLNSGMTIVTILYGFVGFFGYLKYGE
KSKDSITLSLPAGLVPIITQGLFTFAIFISYALQCYVPISIIWENYCSDEMKKSNHSDKY
LLILRLLTTIFTFIIAAAVPHLGLFISLFGAFCLSILGLGFPAIMEICVLWPDKFGKLNW
HLWKDIALVIFAFAGLTSGTFASMKDIIATFSTDASEVAKTFTNATIEQS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g7463.t1 | PANTHER | PTHR22950:SF340 | GLUTAMATE TRANSPORTER POLYPHEMUS-RELATED | 21 | 451 | 2.9E-159 |
| 3 | g7463.t1 | PANTHER | PTHR22950 | AMINO ACID TRANSPORTER | 21 | 451 | 2.9E-159 |
| 1 | g7463.t1 | Pfam | PF01490 | Transmembrane amino acid transporter protein | 43 | 441 | 9.3E-58 |
| 23 | g7463.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 73 | - |
| 30 | g7463.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 74 | 96 | - |
| 14 | g7463.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 97 | 142 | - |
| 28 | g7463.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 143 | 166 | - |
| 21 | g7463.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 167 | 171 | - |
| 25 | g7463.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 172 | 192 | - |
| 17 | g7463.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 193 | 203 | - |
| 26 | g7463.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 204 | 221 | - |
| 19 | g7463.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 222 | 240 | - |
| 29 | g7463.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 241 | 261 | - |
| 13 | g7463.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 262 | 272 | - |
| 24 | g7463.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 273 | 295 | - |
| 18 | g7463.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 296 | 314 | - |
| 27 | g7463.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 315 | 339 | - |
| 16 | g7463.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 340 | 359 | - |
| 33 | g7463.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 360 | 379 | - |
| 20 | g7463.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 380 | 384 | - |
| 31 | g7463.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 385 | 410 | - |
| 15 | g7463.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 411 | 421 | - |
| 32 | g7463.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 422 | 442 | - |
| 22 | g7463.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 443 | 470 | - |
| 11 | g7463.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 74 | 96 | - |
| 12 | g7463.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 144 | 166 | - |
| 4 | g7463.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 197 | 219 | - |
| 8 | g7463.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 239 | 261 | - |
| 7 | g7463.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 274 | 296 | - |
| 5 | g7463.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 311 | 333 | - |
| 9 | g7463.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 361 | 383 | - |
| 10 | g7463.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 388 | 410 | - |
| 6 | g7463.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 422 | 444 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K14209 (solute carrier family 36 (proton-coupled amino acid transporter))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
