General information for g7463.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proton-coupled amino acid transporter-like protein CG1139.
Parent gene
- The parent gene g7463 is located on chr_2: 23884935..23886231 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7463 | g7463.t10 | isoform | g7463.t10 | 23882906 | 23884935 |
| chr_2 | g7463 | g7463.t10 | exon | g7463.t10.exon1 | 23882906 | 23883103 |
| chr_2 | g7463 | g7463.t10 | cds | g7463.t10.CDS1 | 23882906 | 23883103 |
| chr_2 | g7463 | g7463.t10 | exon | g7463.t10.exon2 | 23883163 | 23883436 |
| chr_2 | g7463 | g7463.t10 | cds | g7463.t10.CDS2 | 23883163 | 23883436 |
| chr_2 | g7463 | g7463.t10 | exon | g7463.t10.exon3 | 23883500 | 23883632 |
| chr_2 | g7463 | g7463.t10 | cds | g7463.t10.CDS3 | 23883500 | 23883632 |
| chr_2 | g7463 | g7463.t10 | exon | g7463.t10.exon4 | 23883708 | 23883902 |
| chr_2 | g7463 | g7463.t10 | cds | g7463.t10.CDS4 | 23883708 | 23883902 |
| chr_2 | g7463 | g7463.t10 | exon | g7463.t10.exon5 | 23883974 | 23884094 |
| chr_2 | g7463 | g7463.t10 | cds | g7463.t10.CDS5 | 23883974 | 23884094 |
| chr_2 | g7463 | g7463.t10 | exon | g7463.t10.exon6 | 23884154 | 23884511 |
| chr_2 | g7463 | g7463.t10 | cds | g7463.t10.CDS6 | 23884154 | 23884453 |
| chr_2 | g7463 | g7463.t10 | exon | g7463.t10.exon7 | 23884799 | 23884935 |
| chr_2 | g7463 | g7463.t10 | TTS | g7463.t10 | 23884806 | 23884806 |
| chr_2 | g7463 | g7463.t10 | TSS | g7463.t10 | 23885222 | 23885222 |
Sequences
>g7463.t10 Gene=g7463 Length=1416
ATGGAATTAAATAATAATCCGATAAGGTAATGAGCGTTAAATTTAGATGAAAAAAATATT
TCTTATCAAGAAAGAAATCACAAATCATTTTAGAGATGAAGAGCTAGAAACAGCAATAGC
CTTGGTTCCAAAAAAAGTAATTTCGATACGCTTGCACACTTGCTCAAAGGATGTTTGGGA
ACTGGCATCTTAGCAATGCATGAAGCATTCAGAAATGCTGGATGGCTCAATGGTTTAATA
AGTATGGCACTTATTGGATTTGTTTGTACATATTGTTTTCAAATTTTAATCAAGGCTCAA
TATGCCTTGTGTAAAAAACATCGTCGACCAATTTTATCTTATCCAGAGAGCATGAAGCTC
GCTCTTGAACAAGGTCCTGCTGCACTTAAATGGATTGCACCATCAGCAGTTATCGTTACA
GATGGTTTTTTGATAATTTATCAGCTTGGTGTGTGCATTTGTTATATTGTTTTTGTCGCG
GCAAATGTTCAACTGATTGTTAAAGAATTTTATCAGTTTTATGATATTAAGTATATAATG
TTATGGATATTTATTCCTATGCTTGCAATCAATTGCATCAAGAATCTCAAAATCCTTGCG
CCATTTTCGACAGCGGCAAATGCCATAACATTTGTCGGTCTAGGTCTGGTGCTCTATTAC
GTTTTTGACGATTTACCTTCATTGTCGGAACGACCTGCATTTGGCCCTATTGAATCATAT
CCGCTCTATTTTGGAACTGTTTTGTTTGCACTTGAAGCCGTAGGAGTTTTTATAGCACTC
GAGGCTAATATGGAAAAGCCAAAAAATTTCGTATCGAAATTTGGTGTTTTAAATTCCGGC
ATGACAATTGTAACTATATTATACGGTTTCGTGGGATTTTTTGGTTATTTAAAATATGGT
GAAAAGTCAAAAGACAGTATCACTTTAAGTTTACCAGCTGGACTAGTTCCAATTATCACT
CAGGGATTGTTTACGTTTGCAATTTTCATATCTTATGCATTGCAATGTTACGTACCAATA
TCAATTATTTGGGAGAATTATTGCAGCGATGAAATGAAGAAATCAAATCATAGCGATAAA
TACTTATTGATATTACGTCTTCTTACTACGATTTTTACATTTATAATAGCTGCTGCTGTT
CCGCACTTGGGTCTTTTCATTTCACTTTTTGGCGCTTTCTGTCTGTCAATTTTAGGATTA
GGCTTTCCAGCTATTATGGAAATTTGTGTTTTGTGGCCAGACAAGTTTGGCAAACTCAAT
TGGCATTTATGGAAGGACATTGCTTTAGTTATTTTTGCATTTGCTGGCTTAACGAGTGGA
ACATTTGCATCAATGAAAGATATAATTGCCACATTCTCAACAGATGCATCTGAAGTAGCA
AAAACTTTTACCAATGCTACAATTGAGCAATCTTAG
>g7463.t10 Gene=g7463 Length=406
MHEAFRNAGWLNGLISMALIGFVCTYCFQILIKAQYALCKKHRRPILSYPESMKLALEQG
PAALKWIAPSAVIVTDGFLIIYQLGVCICYIVFVAANVQLIVKEFYQFYDIKYIMLWIFI
PMLAINCIKNLKILAPFSTAANAITFVGLGLVLYYVFDDLPSLSERPAFGPIESYPLYFG
TVLFALEAVGVFIALEANMEKPKNFVSKFGVLNSGMTIVTILYGFVGFFGYLKYGEKSKD
SITLSLPAGLVPIITQGLFTFAIFISYALQCYVPISIIWENYCSDEMKKSNHSDKYLLIL
RLLTTIFTFIIAAAVPHLGLFISLFGAFCLSILGLGFPAIMEICVLWPDKFGKLNWHLWK
DIALVIFAFAGLTSGTFASMKDIIATFSTDASEVAKTFTNATIEQS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g7463.t10 | PANTHER | PTHR22950:SF340 | GLUTAMATE TRANSPORTER POLYPHEMUS-RELATED | 1 | 387 | 1.1E-134 |
| 3 | g7463.t10 | PANTHER | PTHR22950 | AMINO ACID TRANSPORTER | 1 | 387 | 1.1E-134 |
| 1 | g7463.t10 | Pfam | PF01490 | Transmembrane amino acid transporter protein | 4 | 377 | 1.2E-51 |
| 24 | g7463.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 13 | - |
| 30 | g7463.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 14 | 34 | - |
| 17 | g7463.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 35 | 78 | - |
| 29 | g7463.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 79 | 102 | - |
| 20 | g7463.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 103 | 107 | - |
| 27 | g7463.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 108 | 128 | - |
| 16 | g7463.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 129 | 139 | - |
| 31 | g7463.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 140 | 157 | - |
| 21 | g7463.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 158 | 176 | - |
| 25 | g7463.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 177 | 197 | - |
| 15 | g7463.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 198 | 208 | - |
| 28 | g7463.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 209 | 231 | - |
| 19 | g7463.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 232 | 250 | - |
| 33 | g7463.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 251 | 275 | - |
| 14 | g7463.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 276 | 295 | - |
| 32 | g7463.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 296 | 315 | - |
| 23 | g7463.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 316 | 320 | - |
| 34 | g7463.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 321 | 346 | - |
| 18 | g7463.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 347 | 357 | - |
| 26 | g7463.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 358 | 378 | - |
| 22 | g7463.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 379 | 406 | - |
| 13 | g7463.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 10 | 32 | - |
| 7 | g7463.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 79 | 101 | - |
| 11 | g7463.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 111 | 128 | - |
| 4 | g7463.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 133 | 155 | - |
| 9 | g7463.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 175 | 197 | - |
| 5 | g7463.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 210 | 232 | - |
| 10 | g7463.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 247 | 269 | - |
| 12 | g7463.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 297 | 319 | - |
| 6 | g7463.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 324 | 346 | - |
| 8 | g7463.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 358 | 380 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
