General information for g7463.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proton-coupled amino acid transporter-like protein CG1139.
Parent gene
- The parent gene g7463 is located on chr_2: 23884935..23886231 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7463 | g7463.t12 | TTS | g7463.t12 | 23882765 | 23882765 |
| chr_2 | g7463 | g7463.t12 | isoform | g7463.t12 | 23882906 | 23884935 |
| chr_2 | g7463 | g7463.t12 | exon | g7463.t12.exon1 | 23882906 | 23883436 |
| chr_2 | g7463 | g7463.t12 | cds | g7463.t12.CDS1 | 23883145 | 23883436 |
| chr_2 | g7463 | g7463.t12 | exon | g7463.t12.exon2 | 23883500 | 23883632 |
| chr_2 | g7463 | g7463.t12 | cds | g7463.t12.CDS2 | 23883500 | 23883632 |
| chr_2 | g7463 | g7463.t12 | exon | g7463.t12.exon3 | 23883708 | 23883902 |
| chr_2 | g7463 | g7463.t12 | cds | g7463.t12.CDS3 | 23883708 | 23883902 |
| chr_2 | g7463 | g7463.t12 | exon | g7463.t12.exon4 | 23883974 | 23884094 |
| chr_2 | g7463 | g7463.t12 | cds | g7463.t12.CDS4 | 23883974 | 23884094 |
| chr_2 | g7463 | g7463.t12 | exon | g7463.t12.exon5 | 23884154 | 23884511 |
| chr_2 | g7463 | g7463.t12 | cds | g7463.t12.CDS5 | 23884154 | 23884511 |
| chr_2 | g7463 | g7463.t12 | exon | g7463.t12.exon6 | 23884671 | 23884699 |
| chr_2 | g7463 | g7463.t12 | cds | g7463.t12.CDS6 | 23884671 | 23884699 |
| chr_2 | g7463 | g7463.t12 | exon | g7463.t12.exon7 | 23884764 | 23884842 |
| chr_2 | g7463 | g7463.t12 | cds | g7463.t12.CDS7 | 23884764 | 23884842 |
| chr_2 | g7463 | g7463.t12 | exon | g7463.t12.exon8 | 23884910 | 23884935 |
| chr_2 | g7463 | g7463.t12 | cds | g7463.t12.CDS8 | 23884910 | 23884935 |
| chr_2 | g7463 | g7463.t12 | TSS | g7463.t12 | 23885222 | 23885222 |
Sequences
>g7463.t12 Gene=g7463 Length=1472
ATGGAATTAAATAATAATCCGATAAGAGATGAAGAGCTAGAAACAGCAATAGCCTTGGTT
CCAAAAAAAGAAGCTTCAAAAAAAGAAGAAGATTATGATCCACATAAACATCGTAATGTT
GCGCATCCAACTAGTAATTTCGATACGCTTGCACACTTGCTCAAAGGATGTTTGGGAACT
GGCATCTTAGCAATGCATGAAGCATTCAGAAATGCTGGATGGCTCAATGGTTTAATAAGT
ATGGCACTTATTGGATTTGTTTGTACATATTGTTTTCAAATTTTAATCAAGGCTCAATAT
GCCTTGTGTAAAAAACATCGTCGACCAATTTTATCTTATCCAGAGAGCATGAAGCTCGCT
CTTGAACAAGGTCCTGCTGCACTTAAATGGATTGCACCATCAGCAGTTATCGTTACAGAT
GGTTTTTTGATAATTTATCAGCTTGGTGTGTGCATTTGTTATATTGTTTTTGTCGCGGCA
AATGTTCAACTGATTGTTAAAGAATTTTATCAGTTTTATGATATTAAGTATATAATGTTA
TGGATATTTATTCCTATGCTTGCAATCAATTGCATCAAGAATCTCAAAATCCTTGCGCCA
TTTTCGACAGCGGCAAATGCCATAACATTTGTCGGTCTAGGTCTGGTGCTCTATTACGTT
TTTGACGATTTACCTTCATTGTCGGAACGACCTGCATTTGGCCCTATTGAATCATATCCG
CTCTATTTTGGAACTGTTTTGTTTGCACTTGAAGCCGTAGGAGTTTTTATAGCACTCGAG
GCTAATATGGAAAAGCCAAAAAATTTCGTATCGAAATTTGGTGTTTTAAATTCCGGCATG
ACAATTGTAACTATATTATACGGTTTCGTGGGATTTTTTGGTTATTTAAAATATGGTGAA
AAGTCAAAAGACAGTATCACTTTAAGTTTACCAGCTGGACTAGTTCCAATTATCACTCAG
GGATTGTTTACGTTTGCAATTTTCATATCTTATGCATTGCAATGTTACGTACCAATATCA
ATTATTTGGGAGAATTATTGCAGCGATGAAATGAAGAAATCAAATCATAGCGATAAATAC
TTATTGATATTACGTCTTCTTACTACGATTTTTACATTTATAATAGCTGCTGCTGTTCCG
CACTTGGGTCTTTTCATTTCACTTTTTGGCGCTTTCTGTCTGTCAATTTTAGGATTAGGC
TTTCCAGCTATTATGGTAAGTGTCAATTTATAAATAAACACTTCAACTTGACAATGACAT
TTTCTCTATTTTAGGAAATTTGTGTTTTGTGGCCAGACAAGTTTGGCAAACTCAATTGGC
ATTTATGGAAGGACATTGCTTTAGTTATTTTTGCATTTGCTGGCTTAACGAGTGGAACAT
TTGCATCAATGAAAGATATAATTGCCACATTCTCAACAGATGCATCTGAAGTAGCAAAAA
CTTTTACCAATGCTACAATTGAGCAATCTTAG
>g7463.t12 Gene=g7463 Length=410
MELNNNPIRDEELETAIALVPKKEASKKEEDYDPHKHRNVAHPTSNFDTLAHLLKGCLGT
GILAMHEAFRNAGWLNGLISMALIGFVCTYCFQILIKAQYALCKKHRRPILSYPESMKLA
LEQGPAALKWIAPSAVIVTDGFLIIYQLGVCICYIVFVAANVQLIVKEFYQFYDIKYIML
WIFIPMLAINCIKNLKILAPFSTAANAITFVGLGLVLYYVFDDLPSLSERPAFGPIESYP
LYFGTVLFALEAVGVFIALEANMEKPKNFVSKFGVLNSGMTIVTILYGFVGFFGYLKYGE
KSKDSITLSLPAGLVPIITQGLFTFAIFISYALQCYVPISIIWENYCSDEMKKSNHSDKY
LLILRLLTTIFTFIIAAAVPHLGLFISLFGAFCLSILGLGFPAIMVSVNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g7463.t12 | PANTHER | PTHR22950:SF340 | GLUTAMATE TRANSPORTER POLYPHEMUS-RELATED | 21 | 405 | 2.6E-146 |
| 3 | g7463.t12 | PANTHER | PTHR22950 | AMINO ACID TRANSPORTER | 21 | 405 | 2.6E-146 |
| 1 | g7463.t12 | Pfam | PF01490 | Transmembrane amino acid transporter protein | 43 | 405 | 8.7E-54 |
| 21 | g7463.t12 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 73 | - |
| 29 | g7463.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 74 | 96 | - |
| 13 | g7463.t12 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 97 | 142 | - |
| 27 | g7463.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 143 | 166 | - |
| 20 | g7463.t12 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 167 | 171 | - |
| 24 | g7463.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 172 | 192 | - |
| 16 | g7463.t12 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 193 | 203 | - |
| 25 | g7463.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 204 | 221 | - |
| 18 | g7463.t12 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 222 | 240 | - |
| 28 | g7463.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 241 | 261 | - |
| 12 | g7463.t12 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 262 | 272 | - |
| 23 | g7463.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 273 | 295 | - |
| 17 | g7463.t12 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 296 | 314 | - |
| 26 | g7463.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 315 | 339 | - |
| 14 | g7463.t12 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 340 | 359 | - |
| 30 | g7463.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 360 | 379 | - |
| 19 | g7463.t12 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 380 | 384 | - |
| 22 | g7463.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 385 | 408 | - |
| 15 | g7463.t12 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 409 | 410 | - |
| 10 | g7463.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 74 | 96 | - |
| 11 | g7463.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 144 | 166 | - |
| 5 | g7463.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 197 | 219 | - |
| 8 | g7463.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 239 | 261 | - |
| 7 | g7463.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 274 | 296 | - |
| 6 | g7463.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 311 | 333 | - |
| 9 | g7463.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 361 | 380 | - |
| 4 | g7463.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 384 | 406 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
