Gene loci information

Transcript annotation

  • This transcript has been annotated as Proton-coupled amino acid transporter-like protein CG1139.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7463 g7463.t13 TTS g7463.t13 23882765 23882765
chr_2 g7463 g7463.t13 isoform g7463.t13 23883500 23884935
chr_2 g7463 g7463.t13 exon g7463.t13.exon1 23883500 23883632
chr_2 g7463 g7463.t13 cds g7463.t13.CDS1 23883502 23883632
chr_2 g7463 g7463.t13 exon g7463.t13.exon2 23883708 23883902
chr_2 g7463 g7463.t13 cds g7463.t13.CDS2 23883708 23883902
chr_2 g7463 g7463.t13 exon g7463.t13.exon3 23883974 23884058
chr_2 g7463 g7463.t13 cds g7463.t13.CDS3 23883974 23884058
chr_2 g7463 g7463.t13 exon g7463.t13.exon4 23884154 23884511
chr_2 g7463 g7463.t13 cds g7463.t13.CDS4 23884154 23884511
chr_2 g7463 g7463.t13 exon g7463.t13.exon5 23884671 23884699
chr_2 g7463 g7463.t13 cds g7463.t13.CDS5 23884671 23884699
chr_2 g7463 g7463.t13 exon g7463.t13.exon6 23884764 23884842
chr_2 g7463 g7463.t13 cds g7463.t13.CDS6 23884764 23884842
chr_2 g7463 g7463.t13 exon g7463.t13.exon7 23884910 23884935
chr_2 g7463 g7463.t13 cds g7463.t13.CDS7 23884910 23884935
chr_2 g7463 g7463.t13 TSS g7463.t13 23885222 23885222

Sequences

>g7463.t13 Gene=g7463 Length=905
ATGGAATTAAATAATAATCCGATAAGAGATGAAGAGCTAGAAACAGCAATAGCCTTGGTT
CCAAAAAAAGAAGCTTCAAAAAAAGAAGAAGATTATGATCCACATAAACATCGTAATGTT
GCGCATCCAACTAGTAATTTCGATACGCTTGCACACTTGCTCAAAGGATGTTTGGGAACT
GGCATCTTAGCAATGCATGAAGCATTCAGAAATGCTGGATGGCTCAATGGTTTAATAAGT
ATGGCACTTATTGGATTTGTTTGTACATATTGTTTTCAAATTTTAATCAAGGCTCAATAT
GCCTTGTGTAAAAAACATCGTCGACCAATTTTATCTTATCCAGAGAGCATGAAGCTCGCT
CTTGAACAAGGTCCTGCTGCACTTAAATGGATTGCACCATCAGCAGTTATCGTTACAGAT
GGTTTTTTGATAATTTATCAGCTTGGTGTGTGCATTTGTTATATTGTTTTTGTCGCGGCA
AATGTTCAACTGTATATAATGTTATGGATATTTATTCCTATGCTTGCAATCAATTGCATC
AAGAATCTCAAAATCCTTGCGCCATTTTCGACAGCGGCAAATGCCATAACATTTGTCGGT
CTAGGTCTGGTGCTCTATTACGTTTTTGACGATTTACCTTCATTGTCGGAACGACCTGCA
TTTGGCCCTATTGAATCATATCCGCTCTATTTTGGAACTGTTTTGTTTGCACTTGAAGCC
GTAGGAGTTTTTATAGCACTCGAGGCTAATATGGAAAAGCCAAAAAATTTCGTATCGAAA
TTTGGTGTTTTAAATTCCGGCATGACAATTGTAACTATATTATACGGTTTCGTGGGATTT
TTTGGTTATTTAAAATATGGTGAAAAGTCAAAAGACAGTATCACTTTAAGTTTACCAGCT
GGACT

>g7463.t13 Gene=g7463 Length=301
MELNNNPIRDEELETAIALVPKKEASKKEEDYDPHKHRNVAHPTSNFDTLAHLLKGCLGT
GILAMHEAFRNAGWLNGLISMALIGFVCTYCFQILIKAQYALCKKHRRPILSYPESMKLA
LEQGPAALKWIAPSAVIVTDGFLIIYQLGVCICYIVFVAANVQLYIMLWIFIPMLAINCI
KNLKILAPFSTAANAITFVGLGLVLYYVFDDLPSLSERPAFGPIESYPLYFGTVLFALEA
VGVFIALEANMEKPKNFVSKFGVLNSGMTIVTILYGFVGFFGYLKYGEKSKDSITLSLPA
G

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g7463.t13 PANTHER PTHR22950:SF340 GLUTAMATE TRANSPORTER POLYPHEMUS-RELATED 21 300 5.6E-106
3 g7463.t13 PANTHER PTHR22950 AMINO ACID TRANSPORTER 21 300 5.6E-106
1 g7463.t13 Pfam PF01490 Transmembrane amino acid transporter protein 43 299 2.3E-34
15 g7463.t13 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 73 -
21 g7463.t13 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 74 96 -
9 g7463.t13 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 97 126 -
20 g7463.t13 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 127 148 -
14 g7463.t13 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 149 153 -
19 g7463.t13 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 154 177 -
11 g7463.t13 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 178 188 -
17 g7463.t13 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 189 209 -
12 g7463.t13 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 210 228 -
16 g7463.t13 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 229 249 -
10 g7463.t13 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 250 260 -
18 g7463.t13 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 261 284 -
13 g7463.t13 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 285 301 -
5 g7463.t13 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 74 96 -
8 g7463.t13 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 143 165 -
7 g7463.t13 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 185 207 -
4 g7463.t13 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 227 249 -
6 g7463.t13 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 261 283 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed