Gene loci information

Transcript annotation

  • This transcript has been annotated as Proton-coupled amino acid transporter-like protein CG1139.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7463 g7463.t14 TTS g7463.t14 23882765 23882765
chr_2 g7463 g7463.t14 isoform g7463.t14 23883500 23884935
chr_2 g7463 g7463.t14 exon g7463.t14.exon1 23883500 23883632
chr_2 g7463 g7463.t14 cds g7463.t14.CDS1 23883502 23883632
chr_2 g7463 g7463.t14 exon g7463.t14.exon2 23883708 23883902
chr_2 g7463 g7463.t14 cds g7463.t14.CDS2 23883708 23883902
chr_2 g7463 g7463.t14 exon g7463.t14.exon3 23883974 23884094
chr_2 g7463 g7463.t14 cds g7463.t14.CDS3 23883974 23884094
chr_2 g7463 g7463.t14 exon g7463.t14.exon4 23884154 23884511
chr_2 g7463 g7463.t14 cds g7463.t14.CDS4 23884154 23884453
chr_2 g7463 g7463.t14 exon g7463.t14.exon5 23884671 23884718
chr_2 g7463 g7463.t14 exon g7463.t14.exon6 23884764 23884842
chr_2 g7463 g7463.t14 exon g7463.t14.exon7 23884910 23884935
chr_2 g7463 g7463.t14 TSS g7463.t14 23885222 23885222

Sequences

>g7463.t14 Gene=g7463 Length=960
ATGGAATTAAATAATAATCCGATAAGAGATGAAGAGCTAGAAACAGCAATAGCCTTGGTT
CCAAAAAAAGAAGCTTCAAAAAAAGAAGAAGATTATGATCCACATTTTTATTTTCAATCA
CTAGAAACATCGTAATGTTGCGCATCCAACTAGTAATTTCGATACGCTTGCACACTTGCT
CAAAGGATGTTTGGGAACTGGCATCTTAGCAATGCATGAAGCATTCAGAAATGCTGGATG
GCTCAATGGTTTAATAAGTATGGCACTTATTGGATTTGTTTGTACATATTGTTTTCAAAT
TTTAATCAAGGCTCAATATGCCTTGTGTAAAAAACATCGTCGACCAATTTTATCTTATCC
AGAGAGCATGAAGCTCGCTCTTGAACAAGGTCCTGCTGCACTTAAATGGATTGCACCATC
AGCAGTTATCGTTACAGATGGTTTTTTGATAATTTATCAGCTTGGTGTGTGCATTTGTTA
TATTGTTTTTGTCGCGGCAAATGTTCAACTGATTGTTAAAGAATTTTATCAGTTTTATGA
TATTAAGTATATAATGTTATGGATATTTATTCCTATGCTTGCAATCAATTGCATCAAGAA
TCTCAAAATCCTTGCGCCATTTTCGACAGCGGCAAATGCCATAACATTTGTCGGTCTAGG
TCTGGTGCTCTATTACGTTTTTGACGATTTACCTTCATTGTCGGAACGACCTGCATTTGG
CCCTATTGAATCATATCCGCTCTATTTTGGAACTGTTTTGTTTGCACTTGAAGCCGTAGG
AGTTTTTATAGCACTCGAGGCTAATATGGAAAAGCCAAAAAATTTCGTATCGAAATTTGG
TGTTTTAAATTCCGGCATGACAATTGTAACTATATTATACGGTTTCGTGGGATTTTTTGG
TTATTTAAAATATGGTGAAAAGTCAAAAGACAGTATCACTTTAAGTTTACCAGCTGGACT

>g7463.t14 Gene=g7463 Length=249
MHEAFRNAGWLNGLISMALIGFVCTYCFQILIKAQYALCKKHRRPILSYPESMKLALEQG
PAALKWIAPSAVIVTDGFLIIYQLGVCICYIVFVAANVQLIVKEFYQFYDIKYIMLWIFI
PMLAINCIKNLKILAPFSTAANAITFVGLGLVLYYVFDDLPSLSERPAFGPIESYPLYFG
TVLFALEAVGVFIALEANMEKPKNFVSKFGVLNSGMTIVTILYGFVGFFGYLKYGEKSKD
SITLSLPAG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g7463.t14 PANTHER PTHR22950:SF340 GLUTAMATE TRANSPORTER POLYPHEMUS-RELATED 1 248 7.4E-91
3 g7463.t14 PANTHER PTHR22950 AMINO ACID TRANSPORTER 1 248 7.4E-91
1 g7463.t14 Pfam PF01490 Transmembrane amino acid transporter protein 4 247 4.1E-35
15 g7463.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 13 -
21 g7463.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 14 34 -
12 g7463.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 35 78 -
19 g7463.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 79 102 -
13 g7463.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 103 107 -
22 g7463.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 108 128 -
11 g7463.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 129 139 -
20 g7463.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 140 157 -
14 g7463.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 158 176 -
18 g7463.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 177 197 -
10 g7463.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 198 208 -
17 g7463.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 209 232 -
16 g7463.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 233 249 -
9 g7463.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 10 32 -
4 g7463.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 79 101 -
8 g7463.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 111 128 -
7 g7463.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 133 155 -
5 g7463.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 175 197 -
6 g7463.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 209 231 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values