Gene loci information

Transcript annotation

  • This transcript has been annotated as Proton-coupled amino acid transporter-like protein CG1139.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7463 g7463.t16 isoform g7463.t16 23883735 23884935
chr_2 g7463 g7463.t16 exon g7463.t16.exon1 23883735 23883902
chr_2 g7463 g7463.t16 cds g7463.t16.CDS1 23883736 23883902
chr_2 g7463 g7463.t16 exon g7463.t16.exon2 23883974 23884094
chr_2 g7463 g7463.t16 cds g7463.t16.CDS2 23883974 23884094
chr_2 g7463 g7463.t16 exon g7463.t16.exon3 23884154 23884511
chr_2 g7463 g7463.t16 cds g7463.t16.CDS3 23884154 23884511
chr_2 g7463 g7463.t16 exon g7463.t16.exon4 23884671 23884699
chr_2 g7463 g7463.t16 cds g7463.t16.CDS4 23884671 23884699
chr_2 g7463 g7463.t16 exon g7463.t16.exon5 23884764 23884842
chr_2 g7463 g7463.t16 cds g7463.t16.CDS5 23884764 23884842
chr_2 g7463 g7463.t16 TTS g7463.t16 23884806 23884806
chr_2 g7463 g7463.t16 exon g7463.t16.exon6 23884910 23884935
chr_2 g7463 g7463.t16 cds g7463.t16.CDS6 23884910 23884935
chr_2 g7463 g7463.t16 TSS g7463.t16 23885222 23885222

Sequences

>g7463.t16 Gene=g7463 Length=781
ATGGAATTAAATAATAATCCGATAAGAGATGAAGAGCTAGAAACAGCAATAGCCTTGGTT
CCAAAAAAAGAAGCTTCAAAAAAAGAAGAAGATTATGATCCACATAAACATCGTAATGTT
GCGCATCCAACTAGTAATTTCGATACGCTTGCACACTTGCTCAAAGGATGTTTGGGAACT
GGCATCTTAGCAATGCATGAAGCATTCAGAAATGCTGGATGGCTCAATGGTTTAATAAGT
ATGGCACTTATTGGATTTGTTTGTACATATTGTTTTCAAATTTTAATCAAGGCTCAATAT
GCCTTGTGTAAAAAACATCGTCGACCAATTTTATCTTATCCAGAGAGCATGAAGCTCGCT
CTTGAACAAGGTCCTGCTGCACTTAAATGGATTGCACCATCAGCAGTTATCGTTACAGAT
GGTTTTTTGATAATTTATCAGCTTGGTGTGTGCATTTGTTATATTGTTTTTGTCGCGGCA
AATGTTCAACTGATTGTTAAAGAATTTTATCAGTTTTATGATATTAAGTATATAATGTTA
TGGATATTTATTCCTATGCTTGCAATCAATTGCATCAAGAATCTCAAAATCCTTGCGCCA
TTTTCGACAGCGGCAAATGCCATAACATTTGTCGGTCTAGGTCTGGTGCTCTATTACGTT
TTTGACGATTTACCTTCATTGTCGGAACGACCTGCATTTGGCCCTATTGAATCATATCCG
CTCTATTTTGGAACTGTTTTGTTTGCACTTGAAGCCGTAGGAGTTTTTATAGCACTCGAG
G

>g7463.t16 Gene=g7463 Length=260
MELNNNPIRDEELETAIALVPKKEASKKEEDYDPHKHRNVAHPTSNFDTLAHLLKGCLGT
GILAMHEAFRNAGWLNGLISMALIGFVCTYCFQILIKAQYALCKKHRRPILSYPESMKLA
LEQGPAALKWIAPSAVIVTDGFLIIYQLGVCICYIVFVAANVQLIVKEFYQFYDIKYIML
WIFIPMLAINCIKNLKILAPFSTAANAITFVGLGLVLYYVFDDLPSLSERPAFGPIESYP
LYFGTVLFALEAVGVFIALE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g7463.t16 PANTHER PTHR22950:SF340 GLUTAMATE TRANSPORTER POLYPHEMUS-RELATED 21 260 9.0E-91
3 g7463.t16 PANTHER PTHR22950 AMINO ACID TRANSPORTER 21 260 9.0E-91
1 g7463.t16 Pfam PF01490 Transmembrane amino acid transporter protein 43 258 9.5E-26
14 g7463.t16 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 73 -
17 g7463.t16 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 74 96 -
9 g7463.t16 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 97 142 -
19 g7463.t16 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 143 166 -
13 g7463.t16 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 167 171 -
16 g7463.t16 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 172 192 -
11 g7463.t16 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 193 203 -
18 g7463.t16 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 204 221 -
12 g7463.t16 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 222 240 -
15 g7463.t16 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 241 259 -
10 g7463.t16 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 260 260 -
6 g7463.t16 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 74 96 -
7 g7463.t16 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 143 165 -
8 g7463.t16 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 175 192 -
5 g7463.t16 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 199 221 -
4 g7463.t16 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 236 258 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values