Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Proton-coupled amino acid transporter-like protein CG1139.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7463 g7463.t18 isoform g7463.t18 23884056 23884935
chr_2 g7463 g7463.t18 exon g7463.t18.exon1 23884056 23884094
chr_2 g7463 g7463.t18 cds g7463.t18.CDS1 23884056 23884094
chr_2 g7463 g7463.t18 exon g7463.t18.exon2 23884154 23884511
chr_2 g7463 g7463.t18 cds g7463.t18.CDS2 23884154 23884511
chr_2 g7463 g7463.t18 exon g7463.t18.exon3 23884671 23884699
chr_2 g7463 g7463.t18 cds g7463.t18.CDS3 23884671 23884699
chr_2 g7463 g7463.t18 exon g7463.t18.exon4 23884764 23884842
chr_2 g7463 g7463.t18 cds g7463.t18.CDS4 23884764 23884842
chr_2 g7463 g7463.t18 TTS g7463.t18 23884806 23884806
chr_2 g7463 g7463.t18 exon g7463.t18.exon5 23884910 23884935
chr_2 g7463 g7463.t18 cds g7463.t18.CDS5 23884910 23884935
chr_2 g7463 g7463.t18 TSS g7463.t18 23885222 23885222

Sequences

>g7463.t18 Gene=g7463 Length=531
ATGGAATTAAATAATAATCCGATAAGAGATGAAGAGCTAGAAACAGCAATAGCCTTGGTT
CCAAAAAAAGAAGCTTCAAAAAAAGAAGAAGATTATGATCCACATAAACATCGTAATGTT
GCGCATCCAACTAGTAATTTCGATACGCTTGCACACTTGCTCAAAGGATGTTTGGGAACT
GGCATCTTAGCAATGCATGAAGCATTCAGAAATGCTGGATGGCTCAATGGTTTAATAAGT
ATGGCACTTATTGGATTTGTTTGTACATATTGTTTTCAAATTTTAATCAAGGCTCAATAT
GCCTTGTGTAAAAAACATCGTCGACCAATTTTATCTTATCCAGAGAGCATGAAGCTCGCT
CTTGAACAAGGTCCTGCTGCACTTAAATGGATTGCACCATCAGCAGTTATCGTTACAGAT
GGTTTTTTGATAATTTATCAGCTTGGTGTGTGCATTTGTTATATTGTTTTTGTCGCGGCA
AATGTTCAACTGATTGTTAAAGAATTTTATCAGTTTTATGATATTAAGTAT

>g7463.t18 Gene=g7463 Length=177
MELNNNPIRDEELETAIALVPKKEASKKEEDYDPHKHRNVAHPTSNFDTLAHLLKGCLGT
GILAMHEAFRNAGWLNGLISMALIGFVCTYCFQILIKAQYALCKKHRRPILSYPESMKLA
LEQGPAALKWIAPSAVIVTDGFLIIYQLGVCICYIVFVAANVQLIVKEFYQFYDIKY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g7463.t18 PANTHER PTHR22950:SF340 GLUTAMATE TRANSPORTER POLYPHEMUS-RELATED 21 177 1.7E-52
3 g7463.t18 PANTHER PTHR22950 AMINO ACID TRANSPORTER 21 177 1.7E-52
1 g7463.t18 Pfam PF01490 Transmembrane amino acid transporter protein 43 170 1.5E-20
9 g7463.t18 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 73 -
10 g7463.t18 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 74 98 -
6 g7463.t18 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 99 118 -
11 g7463.t18 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 119 138 -
8 g7463.t18 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 139 143 -
12 g7463.t18 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 144 166 -
7 g7463.t18 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 167 177 -
4 g7463.t18 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 74 96 -
5 g7463.t18 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 143 165 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values