Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Proton-coupled amino acid transporter-like protein CG1139.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7463 g7463.t7 TTS g7463.t7 23882765 23882765
chr_2 g7463 g7463.t7 isoform g7463.t7 23882906 23884935
chr_2 g7463 g7463.t7 exon g7463.t7.exon1 23882906 23883103
chr_2 g7463 g7463.t7 cds g7463.t7.CDS1 23882906 23883103
chr_2 g7463 g7463.t7 exon g7463.t7.exon2 23883163 23883436
chr_2 g7463 g7463.t7 cds g7463.t7.CDS2 23883163 23883436
chr_2 g7463 g7463.t7 exon g7463.t7.exon3 23883500 23883632
chr_2 g7463 g7463.t7 cds g7463.t7.CDS3 23883500 23883632
chr_2 g7463 g7463.t7 exon g7463.t7.exon4 23883708 23883875
chr_2 g7463 g7463.t7 cds g7463.t7.CDS4 23883708 23883729
chr_2 g7463 g7463.t7 exon g7463.t7.exon5 23884513 23884699
chr_2 g7463 g7463.t7 exon g7463.t7.exon6 23884764 23884842
chr_2 g7463 g7463.t7 exon g7463.t7.exon7 23884910 23884935
chr_2 g7463 g7463.t7 TSS g7463.t7 23885222 23885222

Sequences

>g7463.t7 Gene=g7463 Length=1065
ATGGAATTAAATAATAATCCGATAAGAGATGAAGAGCTAGAAACAGCAATAGCCTTGGTT
CCAAAAAAAGAAGCTTCAAAAAAAGAAGAAGATTATGATCCACATAAACATCGTAATGTT
GCGCATCCAACTAGGTAAGTATATAATAGTGTATATGTCGCATAGAAAAGTGAGAAGATT
ACACGTTGACAAAATGCTCATCCGCTCATGTTATCTTTTCTGTCTACAAATTGCTCTCTT
TATTTGTCTGTCTCTCATTCTCTTGATTTTTAAAATCTTTGATTTAATTTTAGTCTGGTG
CTCTATTACGTTTTTGACGATTTACCTTCATTGTCGGAACGACCTGCATTTGGCCCTATT
GAATCATATCCGCTCTATTTTGGAACTGTTTTGTTTGCACTTGAAGCCGTAGGAGTTTTT
ATAGCACTCGAGGCTAATATGGAAAAGCCAAAAAATTTCGTATCGAAATTTGGTGTTTTA
AATTCCGGCATGACAATTGTAACTATATTATACGGTTTCGTGGGATTTTTTGGTTATTTA
AAATATGGTGAAAAGTCAAAAGACAGTATCACTTTAAGTTTACCAGCTGGACTAGTTCCA
ATTATCACTCAGGGATTGTTTACGTTTGCAATTTTCATATCTTATGCATTGCAATGTTAC
GTACCAATATCAATTATTTGGGAGAATTATTGCAGCGATGAAATGAAGAAATCAAATCAT
AGCGATAAATACTTATTGATATTACGTCTTCTTACTACGATTTTTACATTTATAATAGCT
GCTGCTGTTCCGCACTTGGGTCTTTTCATTTCACTTTTTGGCGCTTTCTGTCTGTCAATT
TTAGGATTAGGCTTTCCAGCTATTATGGAAATTTGTGTTTTGTGGCCAGACAAGTTTGGC
AAACTCAATTGGCATTTATGGAAGGACATTGCTTTAGTTATTTTTGCATTTGCTGGCTTA
ACGAGTGGAACATTTGCATCAATGAAAGATATAATTGCCACATTCTCAACAGATGCATCT
GAAGTAGCAAAAACTTTTACCAATGCTACAATTGAGCAATCTTAG

>g7463.t7 Gene=g7463 Length=208
MEKPKNFVSKFGVLNSGMTIVTILYGFVGFFGYLKYGEKSKDSITLSLPAGLVPIITQGL
FTFAIFISYALQCYVPISIIWENYCSDEMKKSNHSDKYLLILRLLTTIFTFIIAAAVPHL
GLFISLFGAFCLSILGLGFPAIMEICVLWPDKFGKLNWHLWKDIALVIFAFAGLTSGTFA
SMKDIIATFSTDASEVAKTFTNATIEQS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g7463.t7 PANTHER PTHR22950:SF340 GLUTAMATE TRANSPORTER POLYPHEMUS-RELATED 1 189 6.0E-59
3 g7463.t7 PANTHER PTHR22950 AMINO ACID TRANSPORTER 1 189 6.0E-59
1 g7463.t7 Pfam PF01490 Transmembrane amino acid transporter protein 1 180 2.8E-27
9 g7463.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
15 g7463.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 33 -
12 g7463.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 34 52 -
18 g7463.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 53 77 -
10 g7463.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 78 97 -
19 g7463.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 98 117 -
13 g7463.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 118 122 -
17 g7463.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 123 148 -
11 g7463.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 149 159 -
16 g7463.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 160 180 -
14 g7463.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 181 208 -
8 g7463.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 12 34 -
4 g7463.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 49 71 -
7 g7463.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 99 121 -
6 g7463.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 126 148 -
5 g7463.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 160 182 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values