General information for g7465.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7465 is located on chr_2: 23891659..23893459 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7465 | g7465.t3 | TTS | g7465.t3 | 23890333 | 23890333 |
| chr_2 | g7465 | g7465.t3 | isoform | g7465.t3 | 23890525 | 23891659 |
| chr_2 | g7465 | g7465.t3 | exon | g7465.t3.exon1 | 23890525 | 23890881 |
| chr_2 | g7465 | g7465.t3 | cds | g7465.t3.CDS1 | 23890525 | 23890875 |
| chr_2 | g7465 | g7465.t3 | exon | g7465.t3.exon2 | 23890946 | 23891487 |
| chr_2 | g7465 | g7465.t3 | exon | g7465.t3.exon3 | 23891547 | 23891659 |
| chr_2 | g7465 | g7465.t3 | TSS | g7465.t3 | 23891713 | 23891713 |
Sequences
>g7465.t3 Gene=g7465 Length=1012
ATGAAAGAAAATACGCTTAGAATCTTATATAATGTAATAACAGATCAAACTATATCATCT
AATGGTCGTTTTCTATATGCGTGCAGCAATTATGGAGATATAGCTATTTACAAAGAAAAT
TACAAATTGTGTTCAGAATATAACCAGTGAAAATATATCAGATCCTATATTTGTATTCAA
GAATCAATTTGATGATCAAAAGCCACTCTCATTAGCTTTTCATCGTGATTTTCTTATTGT
CGGCAATACAAATTCATCAGTTTTTGGATATGAAGTAAACAATTCGACTGGAATTATAGG
AAACTTATCATGGAAAATACAACTTGCGCCAGAGATTAGTGAAGATGTAAACGATCTGTG
GATTGATACGGAAAATGAAACTTTGTATGCAGCATGTGGCAATGATGTTTTTCAAATATC
GCTTGAAGATGGTCGAATAATACACAAGTTTGAAGGTCACAAGGACTATATTCATTCTGT
TAATGGTTTTGGAAATAATTTTGTAACTGGTAGTGAGGATGGCACTGTAAAATTATGGGA
TCATCGTCAAAAGAAAGCAACAAATTCACTTGAGCCTAGTAAAAATCCAAATTTAGTTCA
AAAAACTGATGGCAAGCTTTCATTAAGTTGGATAGGAAGTGCATGTATAACAAAGGAATG
GATGGCTTTCGGTGGTGGTGGAACAAAGCTCGCATTGTTTCATATCACTCAACTAAATTA
TCGTACACCTTTTCACATCTTTGAAGAATTTACATCGCCTATTCATGTAACTGAATTTGT
TGATGATAATATACTCTGTGCTGGAGAATCAAAAAGTGTCATGCAATTTTCATTAAAAGG
CAATATGGTAAGTGAAATTGAAACATCAGGCCCAGCAATCTATTCTGTAGTATGGCAAAA
GCAACCCAATAAATTTCTTTCATTATCTGGTGCAAGTAATAAAATTGATGTATCCACAAA
TTTCACATATAAAGACACTGCACTCAACTTTTACAAGAAAGACAAGAATTAA
>g7465.t3 Gene=g7465 Length=116
MAFGGGGTKLALFHITQLNYRTPFHIFEEFTSPIHVTEFVDDNILCAGESKSVMQFSLKG
NMVSEIETSGPAIYSVVWQKQPNKFLSLSGASNKIDVSTNFTYKDTALNFYKKDKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g7465.t3 | PANTHER | PTHR44411 | THO COMPLEX SUBUNIT 6 HOMOLOG | 5 | 110 | 0.0e+00 |
| g7465.t3 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 90 | 9.3e-06 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
