General information for g7467.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Myrosinase 1.
Parent gene
- The parent gene g7467 is located on chr_2: 23896119..23897608 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7467 | g7467.t2 | TSS | g7467.t2 | 23893593 | 23893593 |
| chr_2 | g7467 | g7467.t2 | isoform | g7467.t2 | 23893634 | 23894886 |
| chr_2 | g7467 | g7467.t2 | exon | g7467.t2.exon1 | 23893634 | 23893781 |
| chr_2 | g7467 | g7467.t2 | cds | g7467.t2.CDS1 | 23893634 | 23893781 |
| chr_2 | g7467 | g7467.t2 | exon | g7467.t2.exon2 | 23893841 | 23893883 |
| chr_2 | g7467 | g7467.t2 | cds | g7467.t2.CDS2 | 23893841 | 23893883 |
| chr_2 | g7467 | g7467.t2 | exon | g7467.t2.exon3 | 23894002 | 23894060 |
| chr_2 | g7467 | g7467.t2 | cds | g7467.t2.CDS3 | 23894002 | 23894060 |
| chr_2 | g7467 | g7467.t2 | exon | g7467.t2.exon4 | 23894129 | 23894190 |
| chr_2 | g7467 | g7467.t2 | cds | g7467.t2.CDS4 | 23894129 | 23894190 |
| chr_2 | g7467 | g7467.t2 | exon | g7467.t2.exon5 | 23894271 | 23894886 |
| chr_2 | g7467 | g7467.t2 | cds | g7467.t2.CDS5 | 23894271 | 23894885 |
| chr_2 | g7467 | g7467.t2 | TTS | g7467.t2 | 23895565 | 23895565 |
Sequences
>g7467.t2 Gene=g7467 Length=928
ATGAATATTCTTATCATTTTTTCTTTTTTATTTATTCCACGCATAAGTGCCGTATCTCGG
TCACCTATATTAATTGAAAAAGAATCTTTCGATTCCAGTTTTTATGCATTTCCAAAAAAT
TTCTCTTTTGGTGCGAGTACTGCGGCATATCAAATAGAAGGTGCATGGAATGAAGACGGC
AAAGGGCAAAGTATATGGGATACTTTCACACATAATCACCCTGACATGATTGCTGATGGT
ACGAATGGAGATATTGGAGACGACTCTTATCATCATTATTTGGACGATATAAAAGCACTA
AAAGAAGTTGGTTTTGAACATTACCGCTTTAGTGTTTCATGGGCACGAATTTTTCCAAAT
GGAACGATTGTTAACAAAAAAGGTTTTGATTATTATCATAAGCTGTTAGATCAATTAATT
GTGAATAATATCGAACCCGTTGTCACAATGCTTCATTATGATATTCCTCAATGGGTTCAA
GATTATGGTGGATTTTTGAATCCTTATTTCGTAAAATATTTCAAACTTTATGCACAAACT
TTATATACAGAATTTGGATCAAAAGTAAAAATTTGGATAACTTTTAATGAGCCTTATGAA
TCATGTGTTGAAGGCTATAGTGCAGGAACAAGTCCACCTCTCATAAATTTAAGAGGCACT
GGCGAATATATATGTGCTCACAATGTTCTTTTAGCTCATGCAGCTGCATATGACACTTAC
AAAAAACTTTTTAAAAACGATCAACGAGGAATGGTTGGAATAACTCTAGACAGTCGATTT
TATTTTCCAAAAAATCCTCTTGAAGGATCTGATATTGTTAATAGAGCAATGAACTTTGAA
CTTGGTTGGTTTGCACATCCAATTTTTTCTAAAAATGGTGACTATCCACAAGTAATGATA
GATGAAATAAATGAAAGAAGTAATCAGG
>g7467.t2 Gene=g7467 Length=309
MNILIIFSFLFIPRISAVSRSPILIEKESFDSSFYAFPKNFSFGASTAAYQIEGAWNEDG
KGQSIWDTFTHNHPDMIADGTNGDIGDDSYHHYLDDIKALKEVGFEHYRFSVSWARIFPN
GTIVNKKGFDYYHKLLDQLIVNNIEPVVTMLHYDIPQWVQDYGGFLNPYFVKYFKLYAQT
LYTEFGSKVKIWITFNEPYESCVEGYSAGTSPPLINLRGTGEYICAHNVLLAHAAAYDTY
KKLFKNDQRGMVGITLDSRFYFPKNPLEGSDIVNRAMNFELGWFAHPIFSKNGDYPQVMI
DEINERSNQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g7467.t2 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 35 | 309 | 6.6E-117 |
| 2 | g7467.t2 | PANTHER | PTHR10353:SF38 | LACTASE-PHLORIZIN HYDROLASE | 36 | 308 | 1.3E-103 |
| 3 | g7467.t2 | PANTHER | PTHR10353 | GLYCOSYL HYDROLASE | 36 | 308 | 1.3E-103 |
| 1 | g7467.t2 | Pfam | PF00232 | Glycosyl hydrolase family 1 | 36 | 307 | 1.2E-93 |
| 9 | g7467.t2 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 10 | g7467.t2 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 11 | g7467.t2 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 12 | - |
| 12 | g7467.t2 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 13 | 20 | - |
| 8 | g7467.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 309 | - |
| 5 | g7467.t2 | ProSitePatterns | PS00653 | Glycosyl hydrolases family 1 N-terminal signature. | 41 | 55 | - |
| 4 | g7467.t2 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 32 | 306 | 2.63E-95 |
| 6 | g7467.t2 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 17 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed