Gene loci information

Transcript annotation

  • This transcript has been annotated as Myrosinase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7467 g7467.t3 TSS g7467.t3 23893593 23893593
chr_2 g7467 g7467.t3 isoform g7467.t3 23894269 23895414
chr_2 g7467 g7467.t3 exon g7467.t3.exon1 23894269 23895109
chr_2 g7467 g7467.t3 cds g7467.t3.CDS1 23894406 23895109
chr_2 g7467 g7467.t3 exon g7467.t3.exon2 23895164 23895414
chr_2 g7467 g7467.t3 cds g7467.t3.CDS2 23895164 23895413
chr_2 g7467 g7467.t3 TTS g7467.t3 23895565 23895565

Sequences

>g7467.t3 Gene=g7467 Length=1092
AGTTTGAACATTACCGCTTTAGTGTTTCATGGGCACGAATTTTTCCAAATGGAACGATTG
TTAACAAAAAAGGTTTTGATTATTATCATAAGCTGTTAGATCAATTAATTGTGAATAATA
TCGAACCCGTTGTCACAATGCTTCATTATGATATTCCTCAATGGGTTCAAGATTATGGTG
GATTTTTGAATCCTTATTTCGTAAAATATTTCAAACTTTATGCACAAACTTTATATACAG
AATTTGGATCAAAAGTAAAAATTTGGATAACTTTTAATGAGCCTTATGAATCATGTGTTG
AAGGCTATAGTGCAGGAACAAGTCCACCTCTCATAAATTTAAGAGGCACTGGCGAATATA
TATGTGCTCACAATGTTCTTTTAGCTCATGCAGCTGCATATGACACTTACAAAAAACTTT
TTAAAAACGATCAACGAGGAATGGTTGGAATAACTCTAGACAGTCGATTTTATTTTCCAA
AAAATCCTCTTGAAGGATCTGATATTGTTAATAGAGCAATGAACTTTGAACTTGGTTGGT
TTGCACATCCAATTTTTTCTAAAAATGGTGACTATCCACAAGTAATGATAGATGAAATAA
ATGAAAGAAGTAATCAGGAGGGTAGACCATTTTCACGACTTCCAGAAATGTCAAATCAAG
TAAAAGAATTTATTCGAGGCAGTGCAGATTTTCTTGGGTTCAATTATTACTCATCACGTT
ATGTTGAATTTGATAATTCTGAATATGATCCAACATCACAACCAACTATATATCAAGATT
CAAGAATTAAAACATCAATTGATGAAAATTGGAAGCGAGCTAAGTCAGAATGGTTGTATA
GTGTACCACAAGGACTTCATGATGCTTTAGTTTGGATTAAGAACGAATATAATAACATTC
CAGTAATAATAACAGAAAATGGATGGAGTGATAGTGGTGAACTTGAAGATGATGATCGCA
TAAATTACTACAAAGAACACTTAATATCTGTTGCAAAAGCTATAAATATTGAAAAATGTA
ATGTACTTGGATATACAGCGTGGTCAATCATTGATAATTTCGAATGGCGCAAAGGATTCA
GTGAAAGATTTG

>g7467.t3 Gene=g7467 Length=318
MLHYDIPQWVQDYGGFLNPYFVKYFKLYAQTLYTEFGSKVKIWITFNEPYESCVEGYSAG
TSPPLINLRGTGEYICAHNVLLAHAAAYDTYKKLFKNDQRGMVGITLDSRFYFPKNPLEG
SDIVNRAMNFELGWFAHPIFSKNGDYPQVMIDEINERSNQEGRPFSRLPEMSNQVKEFIR
GSADFLGFNYYSSRYVEFDNSEYDPTSQPTIYQDSRIKTSIDENWKRAKSEWLYSVPQGL
HDALVWIKNEYNNIPVIITENGWSDSGELEDDDRINYYKEHLISVAKAINIEKCNVLGYT
AWSIIDNFEWRKGFSERF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g7467.t3 Gene3D G3DSA:3.20.20.80 Glycosidases 1 318 0
2 g7467.t3 PANTHER PTHR10353:SF36 CYTOSOLIC BETA-GLUCOSIDASE 1 318 0
3 g7467.t3 PANTHER PTHR10353 GLYCOSYL HYDROLASE 1 318 0
6 g7467.t3 PRINTS PR00131 Glycosyl hydrolase family 1 signature 182 196 0
5 g7467.t3 PRINTS PR00131 Glycosyl hydrolase family 1 signature 256 264 0
7 g7467.t3 PRINTS PR00131 Glycosyl hydrolase family 1 signature 271 282 0
4 g7467.t3 PRINTS PR00131 Glycosyl hydrolase family 1 signature 293 310 0
1 g7467.t3 Pfam PF00232 Glycosyl hydrolase family 1 1 318 0
8 g7467.t3 SUPERFAMILY SSF51445 (Trans)glycosidases 2 318 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds MF
GO:0005975 carbohydrate metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values