Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Acylglycerol kinase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7468 g7468.t1 TTS g7468.t1 23896631 23896631
chr_2 g7468 g7468.t1 isoform g7468.t1 23896668 23898016
chr_2 g7468 g7468.t1 exon g7468.t1.exon1 23896668 23897554
chr_2 g7468 g7468.t1 cds g7468.t1.CDS1 23896668 23897554
chr_2 g7468 g7468.t1 exon g7468.t1.exon2 23897608 23898016
chr_2 g7468 g7468.t1 cds g7468.t1.CDS2 23897608 23898016
chr_2 g7468 g7468.t1 TSS g7468.t1 23898038 23898038

Sequences

>g7468.t1 Gene=g7468 Length=1296
ATGGTTATTAAATTTATTAAATGGGTTGGTAGAAACCCTAAAAAGTCCATCTTTTTTGGA
TCTGTTTTAGCCTATGGTGGTGATTATTTGCATCAAAAGTATCAGATTGCTAAATTGATG
CGTAGTTACTGTCAAGAAGCAAGAAAGTATGGCGAAATATCTAGTCCAATCAACACAAAT
TTGAAGAAATGTGTTGTAATTCTTAATCCAGCAGCTAACAAGCGAAATGCAGAAGACGAT
TTTAACGATTATTGTGCTCCGATCCTTAATTTAGCAGGTTATATGATTGACATTGTAAAA
ACACAATCTGATATGCATGCAGTCAATTATGTCTATGAAGAATTGAAAGATAATCCTGAT
ATGATAATTCTCGCTGGTGGAGATGGTACGATTTCAGAATCAATTACAGGTTTAATAAGA
CGAGAAGATGGCTTGGGAAATTCATGTACCATTGGTGTGCTTCCTCTTGGTCAAACTAAC
TTATTTAGTTTAATGCTATTGAACTCAACCTCGCATATTAAAAATAGAGTTGATGAAGTA
AAAGCTATGGCTAATGGAGCTTTAGCTATAGTTAGAGGAAACACAAAGAAGCAGGATATT
ATGAAAATTGAATTAATTACTGAAGAACAACAACAAAGTAACAAAACTTTTTATGCAGTT
GGAAGCATTCATTGGGGCTCATTTTATGATATATTGAGAAAGAAAGATAAATATTGGCTT
ACAGGATCATTGAGAAATTATACAGCATTTTTATTTAATGGTCTATTTCCTCGAGAAAAC
ATAACTTGGAACTGTGATGCAAAAGTTACTTATACAGAACCATGCAATGGATGCTCAAAT
TGTTATGAAAAAATTGAAACAAGAAGTCAGAAACTTCATAATTCGAGATGGTGGAGTAAA
TTTAATGCAAGAGAAGTTGCACCAGAATACTCAAAAGTTCTAAATCCAAACTGCTTACAA
ACTACAGAAATTCAAATTAATGGTTCAGAGTTTGCAATATCAACTAATTTATTAGAAGGT
CAACCTGAAGATAAATCAAAATTAAATATCAAGTTTAATGATAAGCCAGAAAACTATAGT
TTCGATTATATTTGGAAGAGTTGGAAGAGAGTGGCCAATCGTAATTATATTGATATACCC
GAATCGAAACATGTAAGTGCGAGACAAGCTTTACTTATTCCATCTCTGCCTTCTAGCGAT
AAAGAAAGCTTTTTCGCTATCGATAATAATTCTTTTGAAGTAAGACCGATAAAAGTAACT
GTTTTACCTAAACGAGCAAACTTTTTTGTGCTATAG

>g7468.t1 Gene=g7468 Length=431
MVIKFIKWVGRNPKKSIFFGSVLAYGGDYLHQKYQIAKLMRSYCQEARKYGEISSPINTN
LKKCVVILNPAANKRNAEDDFNDYCAPILNLAGYMIDIVKTQSDMHAVNYVYEELKDNPD
MIILAGGDGTISESITGLIRREDGLGNSCTIGVLPLGQTNLFSLMLLNSTSHIKNRVDEV
KAMANGALAIVRGNTKKQDIMKIELITEEQQQSNKTFYAVGSIHWGSFYDILRKKDKYWL
TGSLRNYTAFLFNGLFPRENITWNCDAKVTYTEPCNGCSNCYEKIETRSQKLHNSRWWSK
FNAREVAPEYSKVLNPNCLQTTEIQINGSEFAISTNLLEGQPEDKSKLNIKFNDKPENYS
FDYIWKSWKRVANRNYIDIPESKHVSARQALLIPSLPSSDKESFFAIDNNSFEVRPIKVT
VLPKRANFFVL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g7468.t1 Gene3D G3DSA:3.40.50.10330 - 45 197 0.00
2 g7468.t1 PANTHER PTHR12358:SF51 ACYLGLYCEROL KINASE, MITOCHONDRIAL 2 430 0.00
3 g7468.t1 PANTHER PTHR12358 SPHINGOSINE KINASE 2 430 0.00
1 g7468.t1 Pfam PF00781 Diacylglycerol kinase catalytic domain 64 203 0.00
6 g7468.t1 ProSiteProfiles PS50146 DAG-kinase catalytic (DAGKc) domain profile. 59 207 29.48
4 g7468.t1 SUPERFAMILY SSF111331 NAD kinase/diacylglycerol kinase-like 61 430 0.00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003951 NAD+ kinase activity MF
GO:0016301 kinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values