General information for g7468.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7468 is located on chr_2: 23898016..23900483 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7468 | g7468.t3 | TTS | g7468.t3 | 23896631 | 23896631 |
| chr_2 | g7468 | g7468.t3 | isoform | g7468.t3 | 23896668 | 23897552 |
| chr_2 | g7468 | g7468.t3 | exon | g7468.t3.exon1 | 23896668 | 23897552 |
| chr_2 | g7468 | g7468.t3 | cds | g7468.t3.CDS1 | 23896668 | 23897471 |
| chr_2 | g7468 | g7468.t3 | TSS | g7468.t3 | 23898038 | 23898038 |
Sequences
>g7468.t3 Gene=g7468 Length=885
TTAATAAGACGAGAAGATGGCTTGGGAAATTCATGTACCATTGGTGTGCTTCCTCTTGGT
CAAACTAACTTATTTAGTTTAATGCTATTGAACTCAACCTCGCATATTAAAAATAGAGTT
GATGAAGTAAAAGCTATGGCTAATGGAGCTTTAGCTATAGTTAGAGGAAACACAAAGAAG
CAGGATATTATGAAAATTGAATTAATTACTGAAGAACAACAACAAAGTAACAAAACTTTT
TATGCAGTTGGAAGCATTCATTGGGGCTCATTTTATGATATATTGAGAAAGAAAGATAAA
TATTGGCTTACAGGATCATTGAGAAATTATACAGCATTTTTATTTAATGGTCTATTTCCT
CGAGAAAACATAACTTGGAACTGTGATGCAAAAGTTACTTATACAGAACCATGCAATGGA
TGCTCAAATTGTTATGAAAAAATTGAAACAAGAAGTCAGAAACTTCATAATTCGAGATGG
TGGAGTAAATTTAATGCAAGAGAAGTTGCACCAGAATACTCAAAAGTTCTAAATCCAAAC
TGCTTACAAACTACAGAAATTCAAATTAATGGTTCAGAGTTTGCAATATCAACTAATTTA
TTAGAAGGTCAACCTGAAGATAAATCAAAATTAAATATCAAGTTTAATGATAAGCCAGAA
AACTATAGTTTCGATTATATTTGGAAGAGTTGGAAGAGAGTGGCCAATCGTAATTATATT
GATATACCCGAATCGAAACATGTAAGTGCGAGACAAGCTTTACTTATTCCATCTCTGCCT
TCTAGCGATAAAGAAAGCTTTTTCGCTATCGATAATAATTCTTTTGAAGTAAGACCGATA
AAAGTAACTGTTTTACCTAAACGAGCAAACTTTTTTGTGCTATAG
>g7468.t3 Gene=g7468 Length=267
MLLNSTSHIKNRVDEVKAMANGALAIVRGNTKKQDIMKIELITEEQQQSNKTFYAVGSIH
WGSFYDILRKKDKYWLTGSLRNYTAFLFNGLFPRENITWNCDAKVTYTEPCNGCSNCYEK
IETRSQKLHNSRWWSKFNAREVAPEYSKVLNPNCLQTTEIQINGSEFAISTNLLEGQPED
KSKLNIKFNDKPENYSFDYIWKSWKRVANRNYIDIPESKHVSARQALLIPSLPSSDKESF
FAIDNNSFEVRPIKVTVLPKRANFFVL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g7468.t3 | PANTHER | PTHR12358:SF51 | ACYLGLYCEROL KINASE, MITOCHONDRIAL | 11 | 266 | 0.0e+00 |
| g7468.t3 | PANTHER | PTHR12358 | SPHINGOSINE KINASE | 11 | 266 | 0.0e+00 |
| g7468.t3 | SUPERFAMILY | SSF111331 | NAD kinase/diacylglycerol kinase-like | 20 | 266 | 6.1e-06 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
